Rhodococcus sp. 15-2388-1-1a

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus sp. 15-2388-1-1a is characterized by the presence of flagella, which suggests motility capabilities that may facilitate its survival and colonization in various environments. This species contains a single replicon, indicating a streamlined genetic structure that could contribute to its adaptability and efficiency in resource utilization. The accession number for Rhodococcus sp. 15-2388-1-1a is NPFP00000000.1, which provides a reference for genetic and genomic studies associated with this strain. This information is crucial for researchers aiming to understand its specific metabolic pathways and potential applications in biotechnology or environmental microbiology. Biologically, the presence of flagella can enhance the organism's ability to navigate through diverse habitats, possibly aiding in its role in soil ecosystems or in bioremediation processes. Flagellated bacteria like Rhodococcus sp. are often involved in the degradation of complex organic compounds, suggesting that this species could play a significant role in nutrient cycling and the breakdown of pollutants in the environment. Understanding these traits is essential for harnessing the ecological potential of Rhodococcus sp. 15-2388-1-1a, particularly in applications aimed at environmental restoration or industrial biotechnology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus sp. 15-2388-1-1a
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus sp. 15-2388-1-1a RS1C5_64, whole genome shotgun

Gene Summary

Adenine Count

1103771 bp

Thymine Count

1103728 bp

Guanine Count

1999564 bp

Cytosine Count

2007277 bp

Genome Length

6214590 bp

Protein-coding Genes

5652 genes

Non-Coding Genes

166 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phoh family proteinCH302_18370Not AvailableNegative3871368 - 387241137822.6
lipaseCH302_18375Not AvailableNegative3872505 - 387326026621.3
16s rrna (uracil(1498)-n(3))-methyltransferaseCH302_18380Not AvailableNegative3873257 - 387403026973.2
molecular chaperone dnajCH302_18385Not AvailableNegative3874034 - 387519140505.0
heat-inducible transcriptional repressor hrcaCH302_18390Not AvailableNegative3875290 - 387633337214.8
antitoxin vapbCH302_18395Not AvailablePositive3876468 - 387677311680.0
coproporphyrinogen iii oxidaseCH302_18400Not AvailableNegative3876784 - 387799542514.7
hypothetical proteinCH302_18405Not AvailableNegative3878153 - 38783326184.03
sulfite reductaseCH302_18410Not AvailablePositive3878352 - 388007063907.8
phosphoadenosine phosphosulfate reductaseCH302_18415Not AvailablePositive3880067 - 388077725700.4

Displaying genes 3761 – 3770 of 5818 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da

Displaying 1–2 of 2 metabolites

Health Effects

No health effects information available for this bacterium.