Rhodococcus sp. 15-2388-1-1a

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus sp. 15-2388-1-1a is characterized by the presence of flagella, which suggests motility capabilities that may facilitate its survival and colonization in various environments. This species contains a single replicon, indicating a streamlined genetic structure that could contribute to its adaptability and efficiency in resource utilization. The accession number for Rhodococcus sp. 15-2388-1-1a is NPFP00000000.1, which provides a reference for genetic and genomic studies associated with this strain. This information is crucial for researchers aiming to understand its specific metabolic pathways and potential applications in biotechnology or environmental microbiology. Biologically, the presence of flagella can enhance the organism's ability to navigate through diverse habitats, possibly aiding in its role in soil ecosystems or in bioremediation processes. Flagellated bacteria like Rhodococcus sp. are often involved in the degradation of complex organic compounds, suggesting that this species could play a significant role in nutrient cycling and the breakdown of pollutants in the environment. Understanding these traits is essential for harnessing the ecological potential of Rhodococcus sp. 15-2388-1-1a, particularly in applications aimed at environmental restoration or industrial biotechnology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus sp. 15-2388-1-1a
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus sp. 15-2388-1-1a RS1C5_64, whole genome shotgun

Gene Summary

Adenine Count

1103771 bp

Thymine Count

1103728 bp

Guanine Count

1999564 bp

Cytosine Count

2007277 bp

Genome Length

6214590 bp

Protein-coding Genes

5652 genes

Non-Coding Genes

166 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)/fad-dependent oxidoreductaseCH302_11505Not AvailableNegative2419979 - 242157156017.4
srpbcc family proteinCH302_11510Not AvailableNegative2421726 - 242216315648.8
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinaseCH302_11515Not AvailablePositive2422370 - 242316127248.6
hypothetical proteinCH302_11520Not AvailablePositive2423279 - 242358410587.7
hypothetical proteinCH302_11525Not AvailableNegative2423634 - 24238618399.37
duf1049 domain-containing proteinCH302_11530Not AvailableNegative2423890 - 24241508980.22
csbd family proteinCH302_11535Not AvailableNegative2424245 - 24244155911.88
transglutaminase family proteinCH302_11540Not AvailableNegative2424527 - 242533328499.7
flavin-dependent oxidoreductaseCH302_11545Not AvailableNegative2425418 - 242643737267.8
tetr/acrr family transcriptional regulatorCH302_11550Not AvailableNegative2426519 - 242708820255.1

Displaying genes 2401 – 2410 of 5818 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da

Displaying 1–2 of 2 metabolites

Health Effects

No health effects information available for this bacterium.