Rhodococcus oxybenzonivorans

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus oxybenzonivorans is a notable bacterium characterized by the presence of flagella, which may contribute to its motility and adaptability in various environments. This species possesses two replicons, indicating a complex genomic structure that may play a role in its metabolic versatility. The genomic data for R. oxybenzonivorans can be accessed through the following accession numbers: NZ_CP021354.1 and NZ_CP021357.1. This bacterium is part of the Rhodococcus genus, known for its ability to degrade a wide range of organic compounds, including pollutants. Its flagellar motility may enhance its ability to locate and colonize diverse habitats, particularly those contaminated with organic compounds. The presence of two replicons suggests a potential for increased genetic diversity and adaptability, which could be advantageous in fluctuating environmental conditions. Biologically, the ability of Rhodococcus oxybenzonivorans to thrive in polluted environments highlights its ecological role in bioremediation processes. By breaking down harmful substances, it contributes to the detoxification of ecosystems, potentially restoring balance in areas impacted by anthropogenic activities. The combination of motility and genomic complexity positions R. oxybenzonivorans as a significant player in microbial ecology and environmental sustainability efforts.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus oxybenzonivorans
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus oxybenzonivorans


Gene Summary

Adenine Count

1133271 bp

Thymine Count

1128229 bp

Guanine Count

2168262 bp

Cytosine Count

2182007 bp

Genome Length

6611769 bp

Protein-coding Genes

6080 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chromosomal replication initiator protein dnaaCBI38_RS00005Not AvailablePositive1 - 158759282.2
dna polymerase iii subunit betaCBI38_RS00010Not AvailablePositive2249 - 343341597.7
phosphogluconate dehydrogenase (nad(+)-dependent, decarboxylating)CBI38_RS00015Not AvailablePositive3430 - 440735238.9
dna replication/repair protein recfCBI38_RS00020Not AvailablePositive4408 - 564944945.2
duf721 family proteinCBI38_RS00025Not AvailablePositive5633 - 619319779.4
metal-dependent hydrolaseCBI38_RS00030Not AvailablePositive6317 - 723134811.7
pdr/vanb family oxidoreductaseCBI38_RS00035Not AvailablePositive7228 - 834640546.4
alpha/beta fold hydrolaseCBI38_RS00040Not AvailablePositive8405 - 932834085.4
dna topoisomerase (atp-hydrolyzing) subunit bCBI38_RS00045Not AvailablePositive9551 - 1159374742.4
sensor histidine kinaseCBI38_RS00050Not AvailablePositive12011 - 14863101536.0

Displaying genes 1 – 10 of 6263 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

166 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da

Displaying 1–10 of 166 metabolites

Health Effects

No health effects information available for this bacterium.