Rathayibacter rhapontici

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Rathayibacter

Description

Rathayibacter rhapontici is a Gram-positive bacterium characterized by its rod-shaped morphology. It possesses a single replicon, which is indicative of its genetic organization and replication process. The organism is cataloged under the accession number MUKN00000000.1, which provides a reference for its genetic sequencing and classification in microbial databases. As a member of the Rathayibacter genus, R. rhapontici is involved in specific ecological interactions, primarily affecting plants. The bacterium is known to be a plant pathogen, particularly associated with certain crop species. Its pathogenicity can have significant implications for agricultural practices, as it may lead to detrimental effects on plant health and yield. Understanding the traits of R. rhapontici helps in comprehending its role in ecosystems, especially in relation to its host plants. The Gram-positive nature of the bacterium may influence its interactions with plant defense mechanisms, suggesting potential avenues for research into plant-microbe interactions and disease management strategies. Further studies could explore the specific environmental conditions that favor its proliferation and the impact of its pathogenicity on agricultural systems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusRathayibacter
SpeciesRathayibacter rhapontici
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rathayibacter sp. VKM Ac-2630 contig00142, whole genome shotgun

Gene Summary

Adenine Count

541333 bp

Thymine Count

544780 bp

Guanine Count

1411077 bp

Cytosine Count

1384961 bp

Genome Length

3882151 bp

Protein-coding Genes

3245 genes

Non-Coding Genes

118 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rhamnose abc transporter substrate-binding proteinB0T42_15190Not AvailableNegative3092797 - 309385236519.7
atpaseB0T42_15195Not AvailableNegative3093930 - 309499136545.5
atpaseB0T42_15200Not AvailableNegative3094988 - 309604336405.2
d-xylose abc transporter atp-binding proteinB0T42_15205Not AvailableNegative3096040 - 309759654771.0
laci family transcriptional regulatorB0T42_15210Not AvailablePositive3097789 - 309879635913.8
hypothetical proteinB0T42_15215Not AvailableNegative3098816 - 310004542976.7
hypothetical proteinB0T42_15225Not AvailableNegative3100845 - 310188234848.1
hypothetical proteinB0T42_15230Not AvailableNegative3101999 - 310245115331.5
marr family transcriptional regulatorB0T42_15235Not AvailableNegative3102502 - 310305020006.2
1-pyrroline-5-carboxylate dehydrogenaseB0T42_15240Not AvailableNegative3103104 - 3106571124294.0

Displaying genes 2681 – 2690 of 3363 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.