Rathayibacter rhapontici

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Rathayibacter

Description

Rathayibacter rhapontici is a Gram-positive bacterium characterized by its rod-shaped morphology. It possesses a single replicon, which is indicative of its genetic organization and replication process. The organism is cataloged under the accession number MUKN00000000.1, which provides a reference for its genetic sequencing and classification in microbial databases. As a member of the Rathayibacter genus, R. rhapontici is involved in specific ecological interactions, primarily affecting plants. The bacterium is known to be a plant pathogen, particularly associated with certain crop species. Its pathogenicity can have significant implications for agricultural practices, as it may lead to detrimental effects on plant health and yield. Understanding the traits of R. rhapontici helps in comprehending its role in ecosystems, especially in relation to its host plants. The Gram-positive nature of the bacterium may influence its interactions with plant defense mechanisms, suggesting potential avenues for research into plant-microbe interactions and disease management strategies. Further studies could explore the specific environmental conditions that favor its proliferation and the impact of its pathogenicity on agricultural systems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusRathayibacter
SpeciesRathayibacter rhapontici
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rathayibacter sp. VKM Ac-2630 contig00142, whole genome shotgun

Gene Summary

Adenine Count

541333 bp

Thymine Count

544780 bp

Guanine Count

1411077 bp

Cytosine Count

1384961 bp

Genome Length

3882151 bp

Protein-coding Genes

3245 genes

Non-Coding Genes

118 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tyramine oxidaseB0T42_00860Not AvailableNegative177989 - 17995073010.4
aldehyde dehydrogenase puucB0T42_00865Not AvailableNegative179976 - 18146351600.8
peptidase m20B0T42_00870Not AvailableNegative181447 - 18260139464.5
fimbrial assembly protein fimaB0T42_00875Not AvailableNegative182648 - 18331321944.6
enamine deaminase ridaB0T42_00880Not AvailableNegative183310 - 18375016062.2
fad-dependent oxidoreductaseB0T42_00885Not AvailableNegative183747 - 18506947446.6
hypothetical proteinB0T42_00890Not AvailablePositive185227 - 18618034518.5
hypothetical proteinB0T42_00895Not AvailableNegative186165 - 18779957614.2
nitrate transport permease nrtbB0T42_00905Not AvailablePositive189020 - 18986230638.2
sulfonate abc transporter atp-binding proteinB0T42_00910Not AvailablePositive189862 - 19062927709.4

Displaying genes 251 – 260 of 3363 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.