Pedobacter kyonggii str. K-4-11-1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter kyonggii str. K-4-11-1 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain possesses flagella, which are typically associated with mobility in many bacterial species; however, P. kyonggii str. K-4-11-1 does not exhibit movement. It is psychrotolerant, with an optimal growth temperature of 16°C, indicating its capability to thrive in cooler environments. The genomic analysis reveals that this strain has a single replicon and is non-spore-forming, which suggests a stable genetic structure and a reliance on vegetative reproduction for proliferation. The accession number for this strain is SIXF00000000.1, which provides a reference for further genomic studies and characterization. The psychrotolerant nature of Pedobacter kyonggii str. K-4-11-1 positions it as an important organism in cold environments, potentially contributing to nutrient cycling and organic matter degradation in polar or temperate ecosystems. Its adaptation to lower temperatures may facilitate its role in biogeochemical processes, particularly in cold habitats where microbial activity is essential for ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter kyonggii
StrainK-4-11-1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter kyonggii str. K-4-11-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter kyonggii strain K-4-11-1 contig73, whole genome shotgun

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4970 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
susc/raga family tonb-linked outer membrane proteinEYS08_19335Not AvailablePositive4728008 - 4731166115312.0
ragb/susd family nutrient uptake outer membrane proteinEYS08_19340Not AvailablePositive4731193 - 473269855177.7
tonb-dependent receptorEYS08_19345Not AvailablePositive4733643 - 4736789112597.0
ragb/susd family nutrient uptake outer membrane proteinEYS08_19350Not AvailablePositive4736802 - 473827152770.0
doxx family proteinEYS08_19355Not AvailableNegative4738343 - 473875014302.2
ld-carboxypeptidaseEYS08_19360Not AvailableNegative4738752 - 473965133517.5
methionine--trna ligaseEYS08_19365Not AvailablePositive4739692 - 474180079581.7
Trna-argNot AvailableNot AvailablePositive4741997 - 4742068Not Available
site-specific integraseEYS08_19375Not AvailablePositive4742381 - 474365249592.5
nucleotidyl transferase abieii/abigii toxin family proteinEYS08_19380Not AvailableNegative4744649 - 474562037181.3

Displaying genes 3821 – 3830 of 5037 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.