Pedobacter kyonggii str. K-4-11-1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter kyonggii str. K-4-11-1 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain possesses flagella, which are typically associated with mobility in many bacterial species; however, P. kyonggii str. K-4-11-1 does not exhibit movement. It is psychrotolerant, with an optimal growth temperature of 16°C, indicating its capability to thrive in cooler environments. The genomic analysis reveals that this strain has a single replicon and is non-spore-forming, which suggests a stable genetic structure and a reliance on vegetative reproduction for proliferation. The accession number for this strain is SIXF00000000.1, which provides a reference for further genomic studies and characterization. The psychrotolerant nature of Pedobacter kyonggii str. K-4-11-1 positions it as an important organism in cold environments, potentially contributing to nutrient cycling and organic matter degradation in polar or temperate ecosystems. Its adaptation to lower temperatures may facilitate its role in biogeochemical processes, particularly in cold habitats where microbial activity is essential for ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter kyonggii
StrainK-4-11-1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter kyonggii str. K-4-11-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter kyonggii strain K-4-11-1 contig73, whole genome shotgun

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4970 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
isl3 family transposaseEYS08_18065Not AvailableNegative4392372 - 439345440613.4
helix-turn-helix domain-containing proteinEYS08_18070Not AvailablePositive4393498 - 439398918462.4
hypothetical proteinEYS08_18075Not AvailablePositive4394149 - 439448112489.8
glycosyl hydrolaseEYS08_18080Not AvailableNegative4395112 - 439659055414.8
glucuronyl hydrolaseEYS08_18085Not AvailableNegative4396711 - 439788343993.3
alginate lyaseEYS08_18090Not AvailableNegative4397886 - 439907945383.2
glycoside hydrolase family 2 proteinEYS08_18095Not AvailableNegative4399083 - 440154593138.7
hypothetical proteinEYS08_18100Not AvailableNegative4401924 - 440280831953.4
ragb/susd family nutrient uptake outer membrane proteinEYS08_18105Not AvailableNegative4403027 - 440490170296.1
susc/raga family tonb-linked outer membrane proteinEYS08_18110Not AvailableNegative4404913 - 4407999113414.0

Displaying genes 3571 – 3580 of 5037 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.