Pedobacter kyonggii str. K-4-11-1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter kyonggii str. K-4-11-1 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain possesses flagella, which are typically associated with mobility in many bacterial species; however, P. kyonggii str. K-4-11-1 does not exhibit movement. It is psychrotolerant, with an optimal growth temperature of 16°C, indicating its capability to thrive in cooler environments. The genomic analysis reveals that this strain has a single replicon and is non-spore-forming, which suggests a stable genetic structure and a reliance on vegetative reproduction for proliferation. The accession number for this strain is SIXF00000000.1, which provides a reference for further genomic studies and characterization. The psychrotolerant nature of Pedobacter kyonggii str. K-4-11-1 positions it as an important organism in cold environments, potentially contributing to nutrient cycling and organic matter degradation in polar or temperate ecosystems. Its adaptation to lower temperatures may facilitate its role in biogeochemical processes, particularly in cold habitats where microbial activity is essential for ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter kyonggii
StrainK-4-11-1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter kyonggii str. K-4-11-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter kyonggii strain K-4-11-1 contig73, whole genome shotgun

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4970 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutamate racemaseEYS08_10885Not AvailablePositive2645463 - 264628130867.0
amidophosphoribosyltransferaseEYS08_10890Not AvailablePositive2646529 - 264843072479.7
lyse family translocatorEYS08_10895Not AvailableNegative2649081 - 264970723037.2
mfs transporterEYS08_10900Not AvailablePositive2649851 - 265128751111.4
dcmp deaminase family proteinEYS08_10905Not AvailablePositive2651352 - 265181016382.5
glutamine-hydrolyzing gmp synthaseEYS08_10910Not AvailablePositive2652022 - 265355156336.6
amino acid abc transporter substrate-binding proteinEYS08_10915Not AvailablePositive2653666 - 265487746157.7
rsmb/nop family class i sam-dependent rna methyltransferaseEYS08_10920Not AvailablePositive2654911 - 265608044650.7
marc family proteinEYS08_10925Not AvailableNegative2656546 - 265711220521.1
porinEYS08_10930Not AvailableNegative2657192 - 265852350589.0

Displaying genes 2161 – 2170 of 5037 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.