Pedobacter kyonggii str. K-4-11-1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter kyonggii str. K-4-11-1 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain possesses flagella, which are typically associated with mobility in many bacterial species; however, P. kyonggii str. K-4-11-1 does not exhibit movement. It is psychrotolerant, with an optimal growth temperature of 16°C, indicating its capability to thrive in cooler environments. The genomic analysis reveals that this strain has a single replicon and is non-spore-forming, which suggests a stable genetic structure and a reliance on vegetative reproduction for proliferation. The accession number for this strain is SIXF00000000.1, which provides a reference for further genomic studies and characterization. The psychrotolerant nature of Pedobacter kyonggii str. K-4-11-1 positions it as an important organism in cold environments, potentially contributing to nutrient cycling and organic matter degradation in polar or temperate ecosystems. Its adaptation to lower temperatures may facilitate its role in biogeochemical processes, particularly in cold habitats where microbial activity is essential for ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter kyonggii
StrainK-4-11-1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter kyonggii str. K-4-11-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter kyonggii strain K-4-11-1 contig73, whole genome shotgun

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4970 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
c4-dicarboxylate transporter dctaEYS08_10385Not AvailablePositive2530394 - 253168046189.2
23s rrna (adenine(1618)-n(6))-methyltransferase rlmfEYS08_10390Not AvailablePositive2531830 - 253284638150.4
vit family proteinEYS08_10395Not AvailableNegative2533063 - 253375224158.6
cupin domain-containing proteinEYS08_10400Not AvailableNegative2533866 - 253429115302.5
succinate--coa ligase subunit alphaEYS08_10405Not AvailablePositive2534891 - 253576329891.5
methionine-r-sulfoxide reductaseEYS08_10410Not AvailablePositive2536175 - 253667818687.4
septal ring lytic transglycosylase rlpa family proteinEYS08_10415Not AvailablePositive2536824 - 253720414122.1
ribonucleoside-diphosphate reductaseEYS08_10420Not AvailablePositive2537659 - 253863037320.4
ribonucleoside-diphosphate reductase subunit alphaEYS08_10425Not AvailablePositive2538774 - 254115889298.5
hypothetical proteinEYS08_10430Not AvailablePositive2541334 - 25415588479.15

Displaying genes 2061 – 2070 of 5037 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.