Pedobacter kyonggii str. K-4-11-1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter kyonggii str. K-4-11-1 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain possesses flagella, which are typically associated with mobility in many bacterial species; however, P. kyonggii str. K-4-11-1 does not exhibit movement. It is psychrotolerant, with an optimal growth temperature of 16°C, indicating its capability to thrive in cooler environments. The genomic analysis reveals that this strain has a single replicon and is non-spore-forming, which suggests a stable genetic structure and a reliance on vegetative reproduction for proliferation. The accession number for this strain is SIXF00000000.1, which provides a reference for further genomic studies and characterization. The psychrotolerant nature of Pedobacter kyonggii str. K-4-11-1 positions it as an important organism in cold environments, potentially contributing to nutrient cycling and organic matter degradation in polar or temperate ecosystems. Its adaptation to lower temperatures may facilitate its role in biogeochemical processes, particularly in cold habitats where microbial activity is essential for ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter kyonggii
StrainK-4-11-1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter kyonggii str. K-4-11-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter kyonggii strain K-4-11-1 contig73, whole genome shotgun

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4970 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinEYS08_06150Not AvailablePositive1447557 - 144851937679.3
type ix secretion system membrane protein porp/sprfEYS08_06155Not AvailableNegative1449221 - 145014133935.2
t9ss type b sorting domain-containing proteinEYS08_06160Not AvailableNegative1450150 - 1455918198669.0
threonylcarbamoyl-amp synthaseEYS08_06165Not AvailableNegative1456451 - 145707123102.7
fmn-binding glutamate synthase family proteinEYS08_06170Not AvailablePositive1457155 - 145881660703.0
asparagine--trna ligaseEYS08_06175Not AvailableNegative1459663 - 146111155442.1
transglutaminase family proteinEYS08_06180Not AvailableNegative1461236 - 146221937358.0
alpha-e domain-containing proteinEYS08_06185Not AvailableNegative1462328 - 146326336541.5
circularly permuted type 2 atp-grasp proteinEYS08_06190Not AvailableNegative1463274 - 146472254542.7
ferritinEYS08_06195Not AvailableNegative1465329 - 146585620501.2

Displaying genes 1231 – 1240 of 5037 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.