Pectobacterium parmentieri

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium parmentieri is a Gram-negative bacterium known for its role in plant pathology. It possesses flagella, which contribute to its motility, enabling it to navigate its environment effectively. This bacterium has a unique genomic structure characterized by the presence of two replicons, which may play a role in its adaptability and survival in various conditions. The genetic information of Pectobacterium parmentieri is cataloged in the National Center for Biotechnology Information (NCBI) under the accessions NZ_CP027261.1 and NZ_CP027260.1. These accessions provide valuable genomic data that can be utilized for further research into the bacterium's pathogenic mechanisms and potential control methods. Biologically, Pectobacterium parmentieri is significant due to its association with soft rot diseases in plants, particularly in crops. Its ability to cause tissue maceration and decay can lead to substantial agricultural losses. Understanding its genomic characteristics, including the presence of flagella and replicons, can offer insights into its ecological behavior and interactions with host plants. This knowledge is crucial for developing effective management strategies to mitigate the impact of Pectobacterium parmentieri on agriculture and food security.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium parmentieri
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium parmentieri strain IFB5427 plasmid pPAR01, complete

Gene Summary

Adenine Count

26586 bp

Thymine Count

24975 bp

Guanine Count

24769 bp

Cytosine Count

25668 bp

Genome Length

101998 bp

Protein-coding Genes

118 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
arsenate reductase (glutaredoxin)C5E18_RS16730Not AvailablePositive3504183 - 350456013806.8
dnaa inactivator hdaC5E18_RS16735Not AvailableNegative3504625 - 350533226795.2
uracil permeaseC5E18_RS16740Not AvailableNegative3505432 - 350672145031.8
uracil phosphoribosyltransferaseC5E18_RS16745Not AvailableNegative3506937 - 350756322524.8
phosphoribosylformylglycinamidine cyclo-ligaseC5E18_RS16750Not AvailablePositive3507916 - 350895336819.1
phosphoribosylglycinamide formyltransferaseC5E18_RS16755Not AvailablePositive3508953 - 350958823276.8
tonb-dependent receptor domain-containing proteinC5E18_RS16760Not AvailableNegative3509762 - 351194881577.2
spermidine n1-acetyltransferaseC5E18_RS16765Not AvailablePositive3512384 - 351295922233.4
putative abc transporter permease subunit ybbpC5E18_RS16770Not AvailableNegative3513367 - 351579689930.4
putative abc transporter atp-binding protein ybbaC5E18_RS16775Not AvailableNegative3515793 - 351652426262.4

Displaying genes 3441 – 3450 of 4902 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039659Actinomyces odontolyticusNot availableNot availableNot available
BASm0039685Alistipes finegoldiiNot availableNot availableNot available

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.