Pectobacterium parmentieri

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium parmentieri is a Gram-negative bacterium known for its role in plant pathology. It possesses flagella, which contribute to its motility, enabling it to navigate its environment effectively. This bacterium has a unique genomic structure characterized by the presence of two replicons, which may play a role in its adaptability and survival in various conditions. The genetic information of Pectobacterium parmentieri is cataloged in the National Center for Biotechnology Information (NCBI) under the accessions NZ_CP027261.1 and NZ_CP027260.1. These accessions provide valuable genomic data that can be utilized for further research into the bacterium's pathogenic mechanisms and potential control methods. Biologically, Pectobacterium parmentieri is significant due to its association with soft rot diseases in plants, particularly in crops. Its ability to cause tissue maceration and decay can lead to substantial agricultural losses. Understanding its genomic characteristics, including the presence of flagella and replicons, can offer insights into its ecological behavior and interactions with host plants. This knowledge is crucial for developing effective management strategies to mitigate the impact of Pectobacterium parmentieri on agriculture and food security.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium parmentieri
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium parmentieri strain IFB5427 plasmid pPAR01, complete

Gene Summary

Adenine Count

26586 bp

Thymine Count

24975 bp

Guanine Count

24769 bp

Cytosine Count

25668 bp

Genome Length

101998 bp

Protein-coding Genes

118 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tol-pal system protein tolqC5E18_RS16230Not AvailableNegative3405393 - 340607925499.1
tol-pal system-associated acyl-coa thioesteraseC5E18_RS16235Not AvailableNegative3406076 - 340648015375.6
cyd operon protein ybgeC5E18_RS16240Not AvailableNegative3406614 - 340690710945.8
cytochrome bd-i oxidase subunit cydxC5E18_RS16245Not AvailableNegative3406904 - 34070204187.05
cytochrome d ubiquinol oxidase subunit iiC5E18_RS16250Not AvailableNegative3407037 - 340817642174.4
cytochrome ubiquinol oxidase subunit iC5E18_RS16255Not AvailableNegative3408190 - 340975858101.3
yfap family proteinC5E18_RS16260Not AvailableNegative3410471 - 341162841551.8
succinate--coa ligase subunit alphaC5E18_RS16265Not AvailableNegative3411869 - 341274129782.2
adp-forming succinate--coa ligase subunit betaC5E18_RS16270Not AvailableNegative3412741 - 341390741188.7
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferaseC5E18_RS16275Not AvailableNegative3414117 - 341534344401.4

Displaying genes 3341 – 3350 of 4902 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039659Actinomyces odontolyticusNot availableNot availableNot available
BASm0039685Alistipes finegoldiiNot availableNot availableNot available

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.