Pectobacterium parmentieri

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium parmentieri is a Gram-negative bacterium known for its role in plant pathology. It possesses flagella, which contribute to its motility, enabling it to navigate its environment effectively. This bacterium has a unique genomic structure characterized by the presence of two replicons, which may play a role in its adaptability and survival in various conditions. The genetic information of Pectobacterium parmentieri is cataloged in the National Center for Biotechnology Information (NCBI) under the accessions NZ_CP027261.1 and NZ_CP027260.1. These accessions provide valuable genomic data that can be utilized for further research into the bacterium's pathogenic mechanisms and potential control methods. Biologically, Pectobacterium parmentieri is significant due to its association with soft rot diseases in plants, particularly in crops. Its ability to cause tissue maceration and decay can lead to substantial agricultural losses. Understanding its genomic characteristics, including the presence of flagella and replicons, can offer insights into its ecological behavior and interactions with host plants. This knowledge is crucial for developing effective management strategies to mitigate the impact of Pectobacterium parmentieri on agriculture and food security.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium parmentieri
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium parmentieri strain IFB5427 plasmid pPAR01, complete

Gene Summary

Adenine Count

26586 bp

Thymine Count

24975 bp

Guanine Count

24769 bp

Cytosine Count

25668 bp

Genome Length

101998 bp

Protein-coding Genes

118 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system contractile sheath large subunitC5E18_RS13030Not AvailableNegative2713740 - 271523956642.5
type vi secretion system contractile sheath small subunitC5E18_RS13035Not AvailableNegative2715239 - 271576919645.5
type vi secretion system protein tssaC5E18_RS13040Not AvailableNegative2715849 - 271686837689.1
type vi secretion system-associated protein tagfC5E18_RS13045Not AvailableNegative2716880 - 271758726296.9
type vi secretion system membrane subunit tssmC5E18_RS13050Not AvailableNegative2717602 - 2721219134574.0
dotu family type vi secretion system proteinC5E18_RS13055Not AvailableNegative2721223 - 272246445982.3
type vi secretion system baseplate subunit tsskC5E18_RS13060Not AvailableNegative2722484 - 272382450287.5
type vi secretion system lipoprotein tssjC5E18_RS13065Not AvailableNegative2723834 - 272432818410.5
hypothetical proteinC5E18_RS13070Not AvailableNegative2724352 - 272493321254.5
hypothetical proteinC5E18_RS24765Not AvailableNegative2725711 - 27258816195.81

Displaying genes 2731 – 2740 of 4902 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039659Actinomyces odontolyticusNot availableNot availableNot available
BASm0039685Alistipes finegoldiiNot availableNot availableNot available

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.