Pectobacterium parmentieri

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium parmentieri is a Gram-negative bacterium known for its role in plant pathology. It possesses flagella, which contribute to its motility, enabling it to navigate its environment effectively. This bacterium has a unique genomic structure characterized by the presence of two replicons, which may play a role in its adaptability and survival in various conditions. The genetic information of Pectobacterium parmentieri is cataloged in the National Center for Biotechnology Information (NCBI) under the accessions NZ_CP027261.1 and NZ_CP027260.1. These accessions provide valuable genomic data that can be utilized for further research into the bacterium's pathogenic mechanisms and potential control methods. Biologically, Pectobacterium parmentieri is significant due to its association with soft rot diseases in plants, particularly in crops. Its ability to cause tissue maceration and decay can lead to substantial agricultural losses. Understanding its genomic characteristics, including the presence of flagella and replicons, can offer insights into its ecological behavior and interactions with host plants. This knowledge is crucial for developing effective management strategies to mitigate the impact of Pectobacterium parmentieri on agriculture and food security.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium parmentieri
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium parmentieri strain IFB5427 plasmid pPAR01, complete

Gene Summary

Adenine Count

26586 bp

Thymine Count

24975 bp

Guanine Count

24769 bp

Cytosine Count

25668 bp

Genome Length

101998 bp

Protein-coding Genes

118 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aminodeoxychorismate synthase component 1C5E18_RS11320Not AvailableNegative2389597 - 239102753085.1
yoah family proteinC5E18_RS11325Not AvailablePositive2391158 - 23914008890.08
rida family proteinC5E18_RS11330Not AvailableNegative2391430 - 239177412399.7
atp-dependent dna helicaseC5E18_RS11335Not AvailablePositive2391959 - 239387870902.2
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsabC5E18_RS11340Not AvailablePositive2393993 - 239469425245.3
slp family lipoproteinC5E18_RS11345Not AvailablePositive2394792 - 239541522842.8
long-chain-fatty-acid--coa ligase faddC5E18_RS11350Not AvailablePositive2395662 - 239734762711.6
ribonuclease dC5E18_RS11355Not AvailablePositive2397558 - 239868242005.3
cell division topological specificity factor mineC5E18_RS11360Not AvailableNegative2399296 - 239956510307.5
septum site-determining protein mindC5E18_RS11365Not AvailableNegative2399569 - 240038129570.6

Displaying genes 2471 – 2480 of 4902 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039659Actinomyces odontolyticusNot availableNot availableNot available
BASm0039685Alistipes finegoldiiNot availableNot availableNot available

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.