Clavibacter capsici

Rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Clavibacter

Description

Clavibacter capsici is a Gram-positive, aerobic bacterium characterized by its rod shape. It possesses flagella, which assist in its motility. This organism is notable for its role in causing bacterial canker of pepper, a significant disease affecting pepper plants and potentially impacting agricultural yields. C. capsici has a unique genomic structure, containing three replicons, which may contribute to its adaptability and pathogenicity. The presence of multiple replicons can facilitate genetic variation and the acquisition of traits that enhance survival in various environments. The health effects of C. capsici, particularly its association with bacterial canker, highlight its ecological significance in agricultural contexts. The disease can lead to wilting, necrosis, and ultimately plant death, posing challenges for pepper cultivation. Understanding the biology and pathogenic mechanisms of C. capsici is crucial for developing effective management strategies to mitigate its impact on crops. Overall, the study of Clavibacter capsici not only sheds light on its specific traits but also underscores its role in plant health and agricultural productivity. By addressing the challenges posed by this pathogen, it may be possible to enhance the resilience of pepper crops and ensure sustainable agricultural practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusClavibacter
SpeciesClavibacter capsici
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Clavibacter capsici
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clavibacter capsici strain PF008 plasmid pCM1, complete sequence.

Gene Summary

Adenine Count

6661 bp

Thymine Count

6499 bp

Guanine Count

13653 bp

Cytosine Count

13055 bp

Genome Length

39868 bp

Protein-coding Genes

45 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
squalene/phytoene synthase family proteinAES38_RS16125Not AvailableNegative2959431 - 296046537261.5
polyprenyl synthetase family proteinAES38_RS13985Not AvailableNegative2960462 - 296153237910.1
isopentenyl-diphosphate delta-isomeraseAES38_RS13990Not AvailablePositive2961577 - 296214320649.4
patatin-like phospholipase family proteinAES38_RS13995Not AvailableNegative2962215 - 296309330313.5
marr family transcriptional regulatorAES38_RS14000Not AvailableNegative2963220 - 296378019263.3
mmpl family transporterAES38_RS14005Not AvailablePositive2963858 - 296593670497.0
sdr family nad(p)-dependent oxidoreductaseAES38_RS14010Not AvailablePositive2966013 - 296676525425.5
tetr/acrr family transcriptional regulatorAES38_RS14015Not AvailableNegative2966762 - 296737021416.4
dip1984 family proteinAES38_RS14020Not AvailablePositive2967431 - 296791917661.7
isochorismatase family proteinAES38_RS14025Not AvailablePositive2968180 - 296881521562.3

Displaying genes 3031 – 3040 of 3137 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial canker of pepperCausesPMC6622472

Displaying health effects 1 – 1 of 1 in total