Clavibacter capsici

Rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Clavibacter

Description

Clavibacter capsici is a Gram-positive, aerobic bacterium characterized by its rod shape. It possesses flagella, which assist in its motility. This organism is notable for its role in causing bacterial canker of pepper, a significant disease affecting pepper plants and potentially impacting agricultural yields. C. capsici has a unique genomic structure, containing three replicons, which may contribute to its adaptability and pathogenicity. The presence of multiple replicons can facilitate genetic variation and the acquisition of traits that enhance survival in various environments. The health effects of C. capsici, particularly its association with bacterial canker, highlight its ecological significance in agricultural contexts. The disease can lead to wilting, necrosis, and ultimately plant death, posing challenges for pepper cultivation. Understanding the biology and pathogenic mechanisms of C. capsici is crucial for developing effective management strategies to mitigate its impact on crops. Overall, the study of Clavibacter capsici not only sheds light on its specific traits but also underscores its role in plant health and agricultural productivity. By addressing the challenges posed by this pathogen, it may be possible to enhance the resilience of pepper crops and ensure sustainable agricultural practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusClavibacter
SpeciesClavibacter capsici
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Clavibacter capsici
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clavibacter capsici strain PF008 plasmid pCM1, complete sequence.

Gene Summary

Adenine Count

6661 bp

Thymine Count

6499 bp

Guanine Count

13653 bp

Cytosine Count

13055 bp

Genome Length

39868 bp

Protein-coding Genes

45 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
marr family winged helix-turn-helix transcriptional regulatorAES38_RS13880Not AvailablePositive2940068 - 294052917153.9
m56 family metallopeptidaseAES38_RS13885Not AvailablePositive2940601 - 294145829965.2
vit1/ccc1 family proteinAES38_RS13890Not AvailablePositive2941721 - 294283038777.6
heat repeat domain-containing proteinAES38_RS13895Not AvailablePositive2942893 - 294354323114.9
alpha/beta fold hydrolaseAES38_RS13900Not AvailableNegative2943540 - 294443631618.9
diaminobutyrate--2-oxoglutarate transaminaseAES38_RS13905Not AvailablePositive2944609 - 294591946890.0
response regulatorAES38_RS13910Not AvailableNegative2945980 - 294664223611.2
spo0b domain-containing proteinAES38_RS13915Not AvailableNegative2946639 - 294845361574.1
citmhs family transporterAES38_RS13920Not AvailablePositive2948613 - 295003448946.8
duf2079 domain-containing proteinAES38_RS13925Not AvailableNegative2950110 - 295157051178.5

Displaying genes 3011 – 3020 of 3137 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial canker of pepperCausesPMC6622472

Displaying health effects 1 – 1 of 1 in total