Clavibacter capsici

Rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Clavibacter

Description

Clavibacter capsici is a Gram-positive, aerobic bacterium characterized by its rod shape. It possesses flagella, which assist in its motility. This organism is notable for its role in causing bacterial canker of pepper, a significant disease affecting pepper plants and potentially impacting agricultural yields. C. capsici has a unique genomic structure, containing three replicons, which may contribute to its adaptability and pathogenicity. The presence of multiple replicons can facilitate genetic variation and the acquisition of traits that enhance survival in various environments. The health effects of C. capsici, particularly its association with bacterial canker, highlight its ecological significance in agricultural contexts. The disease can lead to wilting, necrosis, and ultimately plant death, posing challenges for pepper cultivation. Understanding the biology and pathogenic mechanisms of C. capsici is crucial for developing effective management strategies to mitigate its impact on crops. Overall, the study of Clavibacter capsici not only sheds light on its specific traits but also underscores its role in plant health and agricultural productivity. By addressing the challenges posed by this pathogen, it may be possible to enhance the resilience of pepper crops and ensure sustainable agricultural practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusClavibacter
SpeciesClavibacter capsici
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Clavibacter capsici
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clavibacter capsici strain PF008 plasmid pCM1, complete sequence.

Gene Summary

Adenine Count

6661 bp

Thymine Count

6499 bp

Guanine Count

13653 bp

Cytosine Count

13055 bp

Genome Length

39868 bp

Protein-coding Genes

45 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l1AES38_RS13475Not AvailableNegative2868233 - 286891923651.3
50s ribosomal protein l11AES38_RS13480Not AvailableNegative2869022 - 286945315046.4
transcription termination/antitermination protein nusgAES38_RS13485Not AvailableNegative2869507 - 287054737678.2
preprotein translocase subunit seceAES38_RS13490Not AvailableNegative2870743 - 287101510154.8
Trna-trpNot AvailableNot AvailablePositive2871099 - 2871174Not Available
pyridoxal phosphate-dependent aminotransferaseAES38_RS13500Not AvailablePositive2871365 - 287258243392.3
udp-n-acetylmuramate dehydrogenaseAES38_RS13505Not AvailableNegative2872616 - 287377040196.6
maoc family dehydrataseAES38_RS13510Not AvailableNegative2873778 - 287422415146.2
maoc family dehydratase n-terminal domain-containing proteinAES38_RS13515Not AvailableNegative2874221 - 287467015279.1
hypothetical proteinAES38_RS13525Not AvailableNegative2875247 - 28754477338.83

Displaying genes 2931 – 2940 of 3137 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial canker of pepperCausesPMC6622472

Displaying health effects 1 – 1 of 1 in total