Clavibacter capsici

Rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Clavibacter

Description

Clavibacter capsici is a Gram-positive, aerobic bacterium characterized by its rod shape. It possesses flagella, which assist in its motility. This organism is notable for its role in causing bacterial canker of pepper, a significant disease affecting pepper plants and potentially impacting agricultural yields. C. capsici has a unique genomic structure, containing three replicons, which may contribute to its adaptability and pathogenicity. The presence of multiple replicons can facilitate genetic variation and the acquisition of traits that enhance survival in various environments. The health effects of C. capsici, particularly its association with bacterial canker, highlight its ecological significance in agricultural contexts. The disease can lead to wilting, necrosis, and ultimately plant death, posing challenges for pepper cultivation. Understanding the biology and pathogenic mechanisms of C. capsici is crucial for developing effective management strategies to mitigate its impact on crops. Overall, the study of Clavibacter capsici not only sheds light on its specific traits but also underscores its role in plant health and agricultural productivity. By addressing the challenges posed by this pathogen, it may be possible to enhance the resilience of pepper crops and ensure sustainable agricultural practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusClavibacter
SpeciesClavibacter capsici
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Clavibacter capsici
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clavibacter capsici strain PF008 plasmid pCM1, complete sequence.

Gene Summary

Adenine Count

6661 bp

Thymine Count

6499 bp

Guanine Count

13653 bp

Cytosine Count

13055 bp

Genome Length

39868 bp

Protein-coding Genes

45 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha-n-arabinofuranosidaseAES38_RS11710Not AvailableNegative2508499 - 251003756717.4
carbohydrate abc transporter permeaseAES38_RS11715Not AvailableNegative2510117 - 251103733027.1
carbohydrate abc transporter permeaseAES38_RS11720Not AvailableNegative2511034 - 251187030528.6
extracellular solute-binding proteinAES38_RS11725Not AvailableNegative2512040 - 251338947878.8
laci family dna-binding transcriptional regulatorAES38_RS11730Not AvailableNegative2513492 - 251449335765.5
hypothetical proteinAES38_RS11735Not AvailablePositive2514612 - 251503415273.9
duf3054 domain-containing proteinAES38_RS11740Not AvailableNegative2515051 - 251544613844.6
methyltransferaseAES38_RS11745Not AvailableNegative2515456 - 251707555482.5
cellulase family glycosylhydrolaseAES38_RS11750Not AvailableNegative2517151 - 251874954912.3
Trna-alaNot AvailableNot AvailablePositive2518857 - 2518932Not Available

Displaying genes 2571 – 2580 of 3137 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial canker of pepperCausesPMC6622472

Displaying health effects 1 – 1 of 1 in total