Clavibacter capsici

Rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Clavibacter

Description

Clavibacter capsici is a Gram-positive, aerobic bacterium characterized by its rod shape. It possesses flagella, which assist in its motility. This organism is notable for its role in causing bacterial canker of pepper, a significant disease affecting pepper plants and potentially impacting agricultural yields. C. capsici has a unique genomic structure, containing three replicons, which may contribute to its adaptability and pathogenicity. The presence of multiple replicons can facilitate genetic variation and the acquisition of traits that enhance survival in various environments. The health effects of C. capsici, particularly its association with bacterial canker, highlight its ecological significance in agricultural contexts. The disease can lead to wilting, necrosis, and ultimately plant death, posing challenges for pepper cultivation. Understanding the biology and pathogenic mechanisms of C. capsici is crucial for developing effective management strategies to mitigate its impact on crops. Overall, the study of Clavibacter capsici not only sheds light on its specific traits but also underscores its role in plant health and agricultural productivity. By addressing the challenges posed by this pathogen, it may be possible to enhance the resilience of pepper crops and ensure sustainable agricultural practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusClavibacter
SpeciesClavibacter capsici
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Clavibacter capsici
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clavibacter capsici strain PF008 plasmid pCM1, complete sequence.

Gene Summary

Adenine Count

6661 bp

Thymine Count

6499 bp

Guanine Count

13653 bp

Cytosine Count

13055 bp

Genome Length

39868 bp

Protein-coding Genes

45 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histidine phosphatase family proteinAES38_RS10785Not AvailablePositive2308331 - 230902324019.2
duf3090 domain-containing proteinAES38_RS10790Not AvailablePositive2309047 - 230960420237.7
sco1664 family proteinAES38_RS10795Not AvailablePositive2309604 - 231037127720.8
hypothetical proteinAES38_RS15860Not AvailablePositive2310841 - 231232853961.5
30s ribosomal protein s6AES38_RS10800Not AvailableNegative2312545 - 23127727959.34
restriction endonuclease subunit sAES38_RS10805Not AvailableNegative2312843 - 231384436801.0
class i sam-dependent dna methyltransferaseAES38_RS10810Not AvailableNegative2313841 - 231570368830.5
redox-regulated atpase ychfAES38_RS10815Not AvailableNegative2315754 - 231684839151.7
3'-5' exonucleaseAES38_RS10820Not AvailablePositive2316948 - 231757721816.7
dna recombination protein rmucAES38_RS10825Not AvailablePositive2317666 - 231904549674.6

Displaying genes 2381 – 2390 of 3137 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial canker of pepperCausesPMC6622472

Displaying health effects 1 – 1 of 1 in total