Shinella sp.

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Shinella

Description

Shinella sp. is a genus of bacteria that has been identified in environments contaminated with antimony (Sb). This genus is particularly noteworthy due to its ability to thrive in Sb-contaminated sites, suggesting a potential role in bioremediation processes or ecological adaptation to heavy metal pollution. Shinella sp. is characterized by having two replicons, which may contribute to its functional versatility and adaptability in harsh environments. The available genomic data for Shinella sp. can be referenced by the accessions QFOR00000000.1 and QFQX00000000.1, providing a foundation for further studies on its genetic makeup and metabolic capabilities. The presence of Shinella sp. in Sb-contaminated environments indicates its potential significance in biogeochemical cycles, particularly in the transformation and mobility of heavy metals. Understanding the mechanisms by which Shinella sp. interacts with antimony could offer insights into its ecological role and possible applications in environmental cleanup strategies.

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Alphaproteobacteria
Order	Hyphomicrobiales
Family	Rhizobiaceae
Genus	Shinella
Species	Shinella sp.
Strain	No strain

Profile

Physiology
Gram staining properties	Not Available
Shape	Not Available
Mobility	Not Available
Flagellar presence	Not Available
Number of membranes	Not Available

Ecology, Host, and Life Cycle
Oxygen requirements	Not Available
Optimal temperature	Not Available
Temperature range	Not Available
Habitat	Sb-contaminated sites
Biotic relationship	Not Available
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	Not Available

Genome Summary

MAG: Shinella sp. isolate S2_003_000_R2_6

QFQX00000000.1 QFOR00000000.1

Gene Summary

Adenine Count

957209 bp

Thymine Count

952480 bp

Guanine Count

1483145 bp

Cytosine Count

1485650 bp

Genome Length

4878484 bp

Protein-coding Genes

4440 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	DI528_11050	Not Available	Positive	2392970 - 2393800	27478.2
flavin reductase	DI528_11055	Not Available	Negative	2393775 - 2394305	19276.5
hypothetical protein	DI528_11060	Not Available	Negative	2394302 - 2394913	24173.2
hypothetical protein	DI528_11065	Not Available	Negative	2395061 - 2395972	33351.7
class ii glutamine amidotransferase	DI528_11070	Not Available	Positive	2396241 - 2397053	29685.8
hypothetical protein	DI528_11075	Not Available	Negative	2397067 - 2397441	13745.6
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc	DI528_11080	Not Available	Negative	2397438 - 2398448	35228.3
pseudouridylate synthase	DI528_11085	Not Available	Negative	2398853 - 2399665	30086.2
50s ribosomal protein l3 n(5)-glutamine methyltransferase	DI528_11090	Not Available	Positive	2399962 - 2400891	34018.1
flagellar basal body rod protein	DI528_11095	Not Available	Negative	2401274 - 2401600	11119.0

Displaying genes 2261 – 2270 of 10043 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.