Shinella sp.

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Shinella

Description

Shinella sp. is a genus of bacteria that has been identified in environments contaminated with antimony (Sb). This genus is particularly noteworthy due to its ability to thrive in Sb-contaminated sites, suggesting a potential role in bioremediation processes or ecological adaptation to heavy metal pollution. Shinella sp. is characterized by having two replicons, which may contribute to its functional versatility and adaptability in harsh environments. The available genomic data for Shinella sp. can be referenced by the accessions QFOR00000000.1 and QFQX00000000.1, providing a foundation for further studies on its genetic makeup and metabolic capabilities. The presence of Shinella sp. in Sb-contaminated environments indicates its potential significance in biogeochemical cycles, particularly in the transformation and mobility of heavy metals. Understanding the mechanisms by which Shinella sp. interacts with antimony could offer insights into its ecological role and possible applications in environmental cleanup strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusShinella
SpeciesShinella sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSb-contaminated sites
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Shinella sp. isolate S2_003_000_R2_6

Gene Summary

Adenine Count

957209 bp

Thymine Count

952480 bp

Guanine Count

1483145 bp

Cytosine Count

1485650 bp

Genome Length

4878484 bp

Protein-coding Genes

4440 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
leucyl aminopeptidaseDI528_05930Not AvailableNegative1330194 - 133169352734.6
phosphataseDI528_05935Not AvailablePositive1331890 - 133267528554.2
lps export abc transporter permease lptfDI528_05940Not AvailablePositive1332785 - 133396343069.7
lps export abc transporter permease lptgDI528_05945Not AvailablePositive1333960 - 133504239627.6
lps-assembly protein lptdDI528_05950Not AvailablePositive1335042 - 133738485899.5
molecular chaperone suraDI528_05955Not AvailablePositive1337569 - 133851034323.3
4-hydroxythreonine-4-phosphate dehydrogenase pdxaDI528_05960Not AvailablePositive1338525 - 133955036162.8
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferaseDI528_05965Not AvailablePositive1339550 - 134037730071.7
guanylate kinaseDI528_05970Not AvailableNegative1340476 - 134114125359.1
yicc family proteinDI528_05975Not AvailableNegative1341145 - 134203532709.0

Displaying genes 1291 – 1300 of 10043 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.