Porphyromonadaceae bacterium KH3CP3RA

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Porphyromonadaceae

Genus

Description

Porphyromonadaceae bacterium KH3CP3RA is characterized by having a single replicon, which indicates a streamlined genomic structure typical of certain bacteria. The organism is identified through its accession number, FOSU00000000.1, which designates its sequence data in genomic databases. While specific information regarding its metabolic capabilities, ecological niche, and interactions with other organisms is not provided, the Porphyromonadaceae family is generally known to include bacteria that are primarily anaerobic and often involved in the degradation of organic matter. This suggests that Porphyromonadaceae bacterium KH3CP3RA could potentially play a role in biogeochemical cycles, particularly in anaerobic environments where organic material is abundant. The presence of a single replicon may also suggest an efficient replication strategy, enabling the bacterium to adapt to its environment with minimal genetic redundancy. This efficiency could be advantageous in ecological contexts where rapid growth and adaptability to fluctuating conditions are essential for survival. Overall, while specific traits of Porphyromonadaceae bacterium KH3CP3RA remain largely undefined, its taxonomic classification and genomic structure hint at its potential ecological significance, particularly in the context of organic matter decomposition and nutrient cycling in anaerobic ecosystems.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Porphyromonadaceae bacterium KH3CP3RA


Gene Summary

Adenine Count

1394987 bp

Thymine Count

1407271 bp

Guanine Count

1074684 bp

Cytosine Count

1049406 bp

Genome Length

4929248 bp

Protein-coding Genes

3987 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive2818817 - 2818828Not Available
Site-specific recombinaseSAMN05216357_11088Not AvailableNegative2827050 - 282766123399.7
hypothetical proteinSAMN05216357_11089Not AvailablePositive2828783 - 282924316861.3
hypothetical proteinSAMN05216357_11090Not AvailableNegative2829272 - 282970015539.9
hypothetical proteinSAMN05216357_11091Not AvailableNegative2829678 - 28298828073.62
hypothetical proteinSAMN05216357_11092Not AvailableNegative2830918 - 28309952932.51
hypothetical proteinSAMN05216357_11093Not AvailableNegative2831084 - 283207035031.4
hypothetical proteinSAMN05216357_11094Not AvailableNegative2832070 - 283308636478.2
hypothetical proteinSAMN05216357_11095Not AvailableNegative2833073 - 28333219285.73
hypothetical proteinSAMN05216357_11096Not AvailableNegative2833318 - 283440039546.6

Displaying genes 1 – 10 of 4058 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

79 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001429decanoateC10H19O2Chemical structure of decanoateNot available
Average171.2567Da
Monoisotopic171.138504852Da
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da
BASm0001775(9Z)-octadecenoateC18H33O2Chemical structure of (9Z)-octadecenoateNot available
Average281.4534Da
Monoisotopic281.2480553Da

Displaying 1–10 of 79 metabolites

Health Effects

No health effects information available for this bacterium.