Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter psychrophilus |
| Strain | CCM 8644 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1351125 bp
Thymine Count
1346521 bp
Guanine Count
659669 bp
Cytosine Count
641821 bp
Genome Length
3999136 bp
Protein-coding Genes
3389 genes
Non-Coding Genes
40 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna methylase | A5893_17350 | Not Available | Positive | 68861 - 69739 | 34098.0 |
| cytosolic protein | A5893_17355 | Not Available | Positive | 69699 - 70478 | 29428.0 |
| hypothetical protein | A5893_00010 | Not Available | Positive | 73267 - 74139 | 30763.6 |
| hypothetical protein | A5893_00015 | Not Available | Positive | 74821 - 75360 | 19432.1 |
| dna polymerase iii subunit alpha | A5893_00020 | Not Available | Negative | 75603 - 79970 | 164917.0 |
| hypothetical protein | A5893_00025 | Not Available | Positive | 80294 - 81448 | 42805.8 |
| 2-deoxy-d-gluconate 3-dehydrogenase | A5893_00030 | Not Available | Positive | 81494 - 82255 | 26746.0 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | A5893_00035 | Not Available | Positive | 82325 - 83155 | 31256.9 |
| phosphogluconate dehydrogenase (nadp(+)-dependent, decarboxylating) | A5893_00040 | Not Available | Negative | 83233 - 84687 | 53113.8 |
| amidophosphoribosyltransferase | A5893_00045 | Not Available | Positive | 84991 - 86895 | 72412.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
