Pedobacter psychrophilus str. CCM 8644

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter psychrophilus strain CCM 8644 is a Gram-negative, aerobic bacterium characterized by its rod shape. This species is non-motile, possessing true flagella that are not utilized for movement. P. psychrophilus is psychrotolerant, with an optimal growth temperature of 16°C, allowing it to thrive in cold environments. The strain has a single replicon and does not form spores, which indicates a reliance on vegetative growth under its environmental conditions. The accession number for this strain is LWHJ00000000.1, which may serve as a reference for genomic studies and further characterization. Ecologically, the psychrotolerant nature of P. psychrophilus suggests its adaptation to cold habitats, potentially including polar regions or deep-sea environments. Such bacteria play significant roles in nutrient cycling in these cold ecosystems, influencing the microbial community dynamics and overall ecosystem health. The study of P. psychrophilus and its ecological interactions can provide insights into the resilience of microbial life in extreme conditions and their adaptations that support life in varying thermal environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter psychrophilus
StrainCCM 8644

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter psychrophilus str. CCM 8644
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter psychrophilus strain CCM 8644

Gene Summary

Adenine Count

1351125 bp

Thymine Count

1346521 bp

Guanine Count

659669 bp

Cytosine Count

641821 bp

Genome Length

3999136 bp

Protein-coding Genes

3389 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna methylaseA5893_17350Not AvailablePositive68861 - 6973934098.0
cytosolic proteinA5893_17355Not AvailablePositive69699 - 7047829428.0
hypothetical proteinA5893_00010Not AvailablePositive73267 - 7413930763.6
hypothetical proteinA5893_00015Not AvailablePositive74821 - 7536019432.1
dna polymerase iii subunit alphaA5893_00020Not AvailableNegative75603 - 79970164917.0
hypothetical proteinA5893_00025Not AvailablePositive80294 - 8144842805.8
2-deoxy-d-gluconate 3-dehydrogenaseA5893_00030Not AvailablePositive81494 - 8225526746.0
5-dehydro-4-deoxy-d-glucuronate isomeraseA5893_00035Not AvailablePositive82325 - 8315531256.9
phosphogluconate dehydrogenase (nadp(+)-dependent, decarboxylating)A5893_00040Not AvailableNegative83233 - 8468753113.8
amidophosphoribosyltransferaseA5893_00045Not AvailablePositive84991 - 8689572412.7

Displaying genes 81 – 90 of 3429 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.