Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter psychrophilus |
| Strain | CCM 8644 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1351125 bp
Thymine Count
1346521 bp
Guanine Count
659669 bp
Cytosine Count
641821 bp
Genome Length
3999136 bp
Protein-coding Genes
3389 genes
Non-Coding Genes
40 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | A5893_03670 | Not Available | Positive | 900914 - 901678 | 28208.4 |
| 1-aminocyclopropane-1-carboxylate deaminase | A5893_03675 | Not Available | Negative | 901733 - 902614 | 33145.0 |
| hypothetical protein | A5893_03680 | Not Available | Negative | 902682 - 903749 | 38495.1 |
| rna pseudouridine synthase | A5893_03685 | Not Available | Positive | 903954 - 904982 | 39304.1 |
| 4-amino-4-deoxychorismate lyase | A5893_03690 | Not Available | Positive | 905008 - 905853 | 31979.8 |
| methionyl-trna formyltransferase | A5893_03695 | Not Available | Negative | 906083 - 907000 | 34191.3 |
| hypothetical protein | A5893_03700 | Not Available | Positive | 907165 - 908007 | 30823.3 |
| hypothetical protein | A5893_03705 | Not Available | Positive | 908022 - 908930 | 34758.5 |
| hypothetical protein | A5893_03710 | Not Available | Positive | 908968 - 909921 | 37432.4 |
| hypothetical protein | A5893_03715 | Not Available | Negative | 909908 - 910732 | 32338.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
