Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter psychrophilus |
| Strain | CCM 8644 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1351125 bp
Thymine Count
1346521 bp
Guanine Count
659669 bp
Cytosine Count
641821 bp
Genome Length
3999136 bp
Protein-coding Genes
3389 genes
Non-Coding Genes
40 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase | A5893_02005 | Not Available | Positive | 486758 - 487330 | 21117.6 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | A5893_02010 | Not Available | Positive | 487369 - 488688 | 49573.4 |
| diacylglyceryl transferase | A5893_02015 | Not Available | Positive | 488706 - 489869 | 43315.3 |
| hypothetical protein | A5893_02020 | Not Available | Positive | 489869 - 490342 | 17851.9 |
| inositol monophosphatase | A5893_02025 | Not Available | Positive | 490332 - 491123 | 29505.0 |
| cytochrome c | A5893_02030 | Not Available | Positive | 491130 - 491612 | 18700.3 |
| iron/manganese transporter | A5893_02035 | Not Available | Negative | 491648 - 493516 | 68478.8 |
| iron-dependent repressor | A5893_02040 | Not Available | Negative | 493513 - 494169 | 24946.2 |
| asnc family transcriptional regulator | A5893_02045 | Not Available | Positive | 494314 - 494778 | 17877.0 |
| hypothetical protein | A5893_02050 | Not Available | Positive | 494804 - 495820 | 37988.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
