Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter psychrophilus |
| Strain | CCM 8644 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1351125 bp
Thymine Count
1346521 bp
Guanine Count
659669 bp
Cytosine Count
641821 bp
Genome Length
3999136 bp
Protein-coding Genes
3389 genes
Non-Coding Genes
40 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase | A5893_15375 | Not Available | Positive | 3622345 - 3623028 | 25486.6 |
| l-lysine 6-transaminase | A5893_15380 | Not Available | Positive | 3623146 - 3624477 | 50293.4 |
| hypothetical protein | A5893_15385 | Not Available | Negative | 3624569 - 3624751 | 7019.46 |
| hypothetical protein | A5893_15390 | Not Available | Negative | 3624913 - 3625242 | 12715.9 |
| hypothetical protein | A5893_15395 | Not Available | Negative | 3625325 - 3626293 | 35437.1 |
| hypothetical protein | A5893_15400 | Not Available | Negative | 3626296 - 3629799 | 126761.0 |
| nuclease | A5893_15405 | Not Available | Negative | 3629940 - 3630296 | 13999.1 |
| transcriptional regulator | A5893_15410 | Not Available | Positive | 3630426 - 3631202 | 29074.8 |
| hypothetical protein | A5893_15415 | Not Available | Positive | 3631264 - 3631635 | 13284.0 |
| hydroxymethylglutaryl-coa lyase | A5893_15420 | Not Available | Positive | 3631893 - 3632753 | 32024.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
