Pedobacter psychrophilus str. CCM 8644

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter psychrophilus strain CCM 8644 is a Gram-negative, aerobic bacterium characterized by its rod shape. This species is non-motile, possessing true flagella that are not utilized for movement. P. psychrophilus is psychrotolerant, with an optimal growth temperature of 16°C, allowing it to thrive in cold environments. The strain has a single replicon and does not form spores, which indicates a reliance on vegetative growth under its environmental conditions. The accession number for this strain is LWHJ00000000.1, which may serve as a reference for genomic studies and further characterization. Ecologically, the psychrotolerant nature of P. psychrophilus suggests its adaptation to cold habitats, potentially including polar regions or deep-sea environments. Such bacteria play significant roles in nutrient cycling in these cold ecosystems, influencing the microbial community dynamics and overall ecosystem health. The study of P. psychrophilus and its ecological interactions can provide insights into the resilience of microbial life in extreme conditions and their adaptations that support life in varying thermal environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter psychrophilus
StrainCCM 8644

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter psychrophilus str. CCM 8644
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter psychrophilus strain CCM 8644

Gene Summary

Adenine Count

1351125 bp

Thymine Count

1346521 bp

Guanine Count

659669 bp

Cytosine Count

641821 bp

Genome Length

3999136 bp

Protein-coding Genes

3389 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mate family efflux transporterA5893_14815Not AvailableNegative3508420 - 350977248934.4
aaa family atpaseA5893_14820Not AvailableNegative3509896 - 351053724358.9
gnat family acetyltransferaseA5893_14825Not AvailableNegative3510542 - 351099417820.4
duf4442 domain-containing proteinA5893_14830Not AvailableNegative3510995 - 351148018824.0
aspartyl/glutamyl-trna amidotransferase subunit bA5893_14835Not AvailablePositive3511745 - 351321454896.9
alkyl hydroperoxide reductaseA5893_14840Not AvailablePositive3513211 - 351432942291.1
dna-binding response regulatorA5893_14845Not AvailablePositive3514451 - 351513725954.6
valine--trna ligaseA5893_14850Not AvailablePositive3515397 - 3518102103454.0
tat (twin-arginine translocation) pathway signal sequence containing proteinA5893_14855Not AvailablePositive3518571 - 351927225053.6
dessication-associated proteinA5893_14860Not AvailablePositive3519283 - 352013129881.6

Displaying genes 3011 – 3020 of 3429 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.