Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter psychrophilus |
| Strain | CCM 8644 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1351125 bp
Thymine Count
1346521 bp
Guanine Count
659669 bp
Cytosine Count
641821 bp
Genome Length
3999136 bp
Protein-coding Genes
3389 genes
Non-Coding Genes
40 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome recycling factor | A5893_12725 | Not Available | Negative | 3046373 - 3046936 | 20873.3 |
| ump kinase | A5893_12730 | Not Available | Negative | 3046954 - 3047658 | 25905.7 |
| hypothetical protein | A5893_12735 | Not Available | Positive | 3047688 - 3047939 | 9974.79 |
| radical sam protein | A5893_12740 | Not Available | Positive | 3047989 - 3049056 | 40371.4 |
| hypothetical protein | A5893_12745 | Not Available | Negative | 3049321 - 3049887 | 22672.6 |
| n-acetylmuramic acid 6-phosphate etherase | A5893_12750 | Not Available | Negative | 3049891 - 3050709 | 29315.6 |
| extradiol dioxygenase | A5893_12755 | Not Available | Negative | 3050790 - 3051116 | 12633.1 |
| carboxyl-terminal protease | A5893_12760 | Not Available | Positive | 3051251 - 3052894 | 61349.6 |
| hypothetical protein | A5893_12765 | Not Available | Negative | 3052913 - 3053122 | 7438.88 |
| ribosome biogenesis gtpase der | A5893_12770 | Not Available | Negative | 3053187 - 3054488 | 49130.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
