Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter psychrophilus |
| Strain | CCM 8644 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1351125 bp
Thymine Count
1346521 bp
Guanine Count
659669 bp
Cytosine Count
641821 bp
Genome Length
3999136 bp
Protein-coding Genes
3389 genes
Non-Coding Genes
40 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endonuclease/exonuclease/phosphatase | A5893_12465 | Not Available | Positive | 2988082 - 2989197 | 42938.1 |
| cysteine--trna ligase | A5893_12470 | Not Available | Positive | 2989239 - 2990699 | 54672.3 |
| phosphonoacetate hydrolase | A5893_12475 | Not Available | Positive | 2990803 - 2991144 | 12576.0 |
| 30s ribosomal protein s12 | A5893_12480 | Not Available | Positive | 2991431 - 2991853 | 15216.6 |
| 30s ribosomal protein s7 | A5893_12485 | Not Available | Positive | 2991873 - 2992340 | 17595.6 |
| elongation factor g | A5893_12490 | Not Available | Positive | 2992435 - 2994540 | 77577.9 |
| 30s ribosomal protein s10 | A5893_12495 | Not Available | Positive | 2994683 - 2994988 | 11391.1 |
| dna-binding protein | A5893_12500 | Not Available | Positive | 2995122 - 2996168 | 40102.8 |
| hypothetical protein | A5893_12505 | Not Available | Positive | 2996264 - 2997091 | 31480.6 |
| 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase | A5893_12510 | Not Available | Negative | 2997308 - 2999302 | 73719.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
