Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter psychrophilus |
| Strain | CCM 8644 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1351125 bp
Thymine Count
1346521 bp
Guanine Count
659669 bp
Cytosine Count
641821 bp
Genome Length
3999136 bp
Protein-coding Genes
3389 genes
Non-Coding Genes
40 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| coproporphyrinogen iii oxidase | A5893_11155 | Not Available | Positive | 2669876 - 2671240 | 52506.1 |
| short-chain dehydrogenase | A5893_11160 | Not Available | Positive | 2671369 - 2672076 | 25139.1 |
| hypothetical protein | A5893_11165 | Not Available | Negative | 2672149 - 2673099 | 37089.3 |
| alginate o-acetyltransferase | A5893_11170 | Not Available | Negative | 2673103 - 2674533 | 55738.7 |
| signal recognition particle protein | A5893_11175 | Not Available | Positive | 2675015 - 2676361 | 49260.2 |
| dna ligase-associated dexh box helicase | A5893_11180 | Not Available | Positive | 2676837 - 2677862 | 38450.4 |
| atp-dependent dna ligase | A5893_11185 | Not Available | Positive | 2677933 - 2679549 | 62336.9 |
| glutamate--trna ligase | A5893_11190 | Not Available | Positive | 2679730 - 2681262 | 58887.0 |
| cytochrome oxidase maturation protein | A5893_11195 | Not Available | Negative | 2681286 - 2681465 | 6817.35 |
| atpase | A5893_11200 | Not Available | Negative | 2681462 - 2683849 | 88289.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
