Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter psychrophilus |
| Strain | CCM 8644 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1351125 bp
Thymine Count
1346521 bp
Guanine Count
659669 bp
Cytosine Count
641821 bp
Genome Length
3999136 bp
Protein-coding Genes
3389 genes
Non-Coding Genes
40 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase m16 | A5893_08240 | Not Available | Positive | 1997399 - 1998670 | 48256.7 |
| hypothetical protein | A5893_08245 | Not Available | Positive | 1998817 - 1999941 | 43004.4 |
| carbohydrate kinase | A5893_08250 | Not Available | Negative | 1999944 - 2000918 | 35391.3 |
| aspartate aminotransferase | A5893_08255 | Not Available | Negative | 2001016 - 2002155 | 41687.7 |
| peptidase s9 | A5893_08260 | Not Available | Negative | 2002818 - 2005637 | 106641.0 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | A5893_08265 | Not Available | Negative | 2005737 - 2006417 | 25588.6 |
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | A5893_08270 | Not Available | Negative | 2006484 - 2007533 | 40126.4 |
| abc transporter permease | A5893_08275 | Not Available | Negative | 2008002 - 2009099 | 39936.7 |
| abc transporter atp-binding protein | A5893_08280 | Not Available | Negative | 2009125 - 2009889 | 28300.2 |
| gxxexxy protein | A5893_08285 | Not Available | Negative | 2010431 - 2010829 | 15253.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
