Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter psychrophilus |
| Strain | CCM 8644 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1351125 bp
Thymine Count
1346521 bp
Guanine Count
659669 bp
Cytosine Count
641821 bp
Genome Length
3999136 bp
Protein-coding Genes
3389 genes
Non-Coding Genes
40 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| agmatine deiminase | A5893_08035 | Not Available | Positive | 1953828 - 1954880 | 39892.9 |
| hypothetical protein | A5893_08040 | Not Available | Negative | 1954945 - 1955283 | 12888.5 |
| hypothetical protein | A5893_08045 | Not Available | Negative | 1955280 - 1955789 | 19603.9 |
| pa-phosphatase | A5893_08050 | Not Available | Negative | 1955874 - 1956692 | 29639.7 |
| succinyl-coa--3-ketoacid-coa transferase | A5893_08055 | Not Available | Negative | 1956801 - 1957454 | 23220.7 |
| succinyl-coa--3-ketoacid-coa transferase | A5893_08060 | Not Available | Negative | 1957500 - 1958204 | 25578.0 |
| hypothetical protein | A5893_08065 | Not Available | Negative | 1958413 - 1959732 | 49675.9 |
| rna polymerase subunit sigma-70 | A5893_08070 | Not Available | Negative | 1959716 - 1960285 | 22231.8 |
| hypothetical protein | A5893_08075 | Not Available | Negative | 1960342 - 1960797 | 16916.3 |
| transcriptional regulator | A5893_08080 | Not Available | Negative | 1960869 - 1961174 | 11766.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
