Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter psychrophilus |
| Strain | CCM 8644 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1351125 bp
Thymine Count
1346521 bp
Guanine Count
659669 bp
Cytosine Count
641821 bp
Genome Length
3999136 bp
Protein-coding Genes
3389 genes
Non-Coding Genes
40 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent dna helicase recq | A5893_07905 | Not Available | Positive | 1922563 - 1924752 | 82497.7 |
| 3-deoxy-8-phosphooctulonate synthase | A5893_07910 | Not Available | Positive | 1924990 - 1925799 | 29455.8 |
| hypothetical protein | A5893_07915 | Not Available | Negative | 1925845 - 1927218 | 53748.1 |
| cobalamin-binding protein | A5893_07920 | Not Available | Positive | 1927244 - 1928032 | 30694.3 |
| Trna-leu | Not Available | Not Available | Positive | 1928241 - 1928322 | Not Available |
| trigger factor | A5893_07930 | Not Available | Positive | 1928396 - 1929739 | 51445.2 |
| atp-dependent clp protease proteolytic subunit | A5893_07935 | Not Available | Positive | 1929906 - 1930613 | 26418.9 |
| atp-dependent clp protease atp-binding subunit clpx | A5893_07940 | Not Available | Positive | 1930606 - 1931847 | 46172.4 |
| amp nucleosidase | A5893_07945 | Not Available | Positive | 1931894 - 1932751 | 31753.3 |
| hypothetical protein | A5893_17415 | Not Available | Negative | 1933661 - 1933930 | 10308.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
