Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter psychrophilus |
| Strain | CCM 8644 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1351125 bp
Thymine Count
1346521 bp
Guanine Count
659669 bp
Cytosine Count
641821 bp
Genome Length
3999136 bp
Protein-coding Genes
3389 genes
Non-Coding Genes
40 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase | A5893_06665 | Not Available | Negative | 1652598 - 1653479 | 32139.2 |
| elongation factor 4 | A5893_06670 | Not Available | Negative | 1653557 - 1655341 | 66503.8 |
| atp-dependent dna helicase | A5893_06675 | Not Available | Negative | 1655578 - 1657878 | 87446.9 |
| hypothetical protein | A5893_06680 | Not Available | Negative | 1657959 - 1659413 | 56135.3 |
| peptidase dimerization domain protein | A5893_06685 | Not Available | Positive | 1660185 - 1661555 | 50712.6 |
| hypothetical protein | A5893_06690 | Not Available | Negative | 1661599 - 1662558 | 37390.6 |
| alginate o-acetyltransferase | A5893_06695 | Not Available | Negative | 1662524 - 1663969 | 56706.9 |
| transketolase | A5893_06700 | Not Available | Negative | 1664110 - 1665951 | 67679.2 |
| elongation factor p | A5893_06705 | Not Available | Positive | 1666104 - 1666664 | 20780.9 |
| peptide-methionine (r)-s-oxide reductase | A5893_06710 | Not Available | Negative | 1666742 - 1667128 | 14108.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
