Pedobacter psychrophilus str. CCM 8644

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter psychrophilus strain CCM 8644 is a Gram-negative, aerobic bacterium characterized by its rod shape. This species is non-motile, possessing true flagella that are not utilized for movement. P. psychrophilus is psychrotolerant, with an optimal growth temperature of 16°C, allowing it to thrive in cold environments. The strain has a single replicon and does not form spores, which indicates a reliance on vegetative growth under its environmental conditions. The accession number for this strain is LWHJ00000000.1, which may serve as a reference for genomic studies and further characterization. Ecologically, the psychrotolerant nature of P. psychrophilus suggests its adaptation to cold habitats, potentially including polar regions or deep-sea environments. Such bacteria play significant roles in nutrient cycling in these cold ecosystems, influencing the microbial community dynamics and overall ecosystem health. The study of P. psychrophilus and its ecological interactions can provide insights into the resilience of microbial life in extreme conditions and their adaptations that support life in varying thermal environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter psychrophilus
StrainCCM 8644

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter psychrophilus str. CCM 8644
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter psychrophilus strain CCM 8644

Gene Summary

Adenine Count

1351125 bp

Thymine Count

1346521 bp

Guanine Count

659669 bp

Cytosine Count

641821 bp

Genome Length

3999136 bp

Protein-coding Genes

3389 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolaseA5893_06665Not AvailableNegative1652598 - 165347932139.2
elongation factor 4A5893_06670Not AvailableNegative1653557 - 165534166503.8
atp-dependent dna helicaseA5893_06675Not AvailableNegative1655578 - 165787887446.9
hypothetical proteinA5893_06680Not AvailableNegative1657959 - 165941356135.3
peptidase dimerization domain proteinA5893_06685Not AvailablePositive1660185 - 166155550712.6
hypothetical proteinA5893_06690Not AvailableNegative1661599 - 166255837390.6
alginate o-acetyltransferaseA5893_06695Not AvailableNegative1662524 - 166396956706.9
transketolaseA5893_06700Not AvailableNegative1664110 - 166595167679.2
elongation factor pA5893_06705Not AvailablePositive1666104 - 166666420780.9
peptide-methionine (r)-s-oxide reductaseA5893_06710Not AvailableNegative1666742 - 166712814108.5

Displaying genes 1411 – 1420 of 3429 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.