Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter psychrophilus |
| Strain | CCM 8644 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1351125 bp
Thymine Count
1346521 bp
Guanine Count
659669 bp
Cytosine Count
641821 bp
Genome Length
3999136 bp
Protein-coding Genes
3389 genes
Non-Coding Genes
40 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| monofunctional biosynthetic peptidoglycan transglycosylase | A5893_06415 | Not Available | Positive | 1600248 - 1600979 | 28266.4 |
| abc transporter atpase | A5893_06420 | Not Available | Negative | 1600962 - 1601444 | 18908.2 |
| hypothetical protein | A5893_06425 | Not Available | Positive | 1601567 - 1602031 | 18021.7 |
| rna polymerase sigma-54 factor | A5893_06430 | Not Available | Negative | 1602059 - 1603528 | 56473.8 |
| mechanosensitive ion channel protein mscl | A5893_06435 | Not Available | Positive | 1603678 - 1604073 | 14044.7 |
| 50s ribosomal protein l34 | A5893_06440 | Not Available | Positive | 1604174 - 1604332 | 6291.69 |
| ribonuclease p protein component | A5893_06445 | Not Available | Positive | 1604400 - 1604765 | 14374.9 |
| membrane protein insertion efficiency factor yidd | A5893_06450 | Not Available | Positive | 1604796 - 1605026 | 8612.82 |
| trna threonylcarbamoyladenosine biosynthesis protein tsab | A5893_06455 | Not Available | Positive | 1605036 - 1605725 | 25350.5 |
| hypothetical protein | A5893_06460 | Not Available | Negative | 1605722 - 1607185 | 55568.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
