Colwellia sp. PAMC 20917

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Colwelliaceae

Genus

Colwellia

Description

Colwellia sp. PAMC 20917 is a rod-shaped bacterium notable for its possession of flagella, which indicates its capability for motility. The organism has a single replicon, suggesting a streamlined genetic architecture that could be advantageous for its adaptation to various environments. The genomic information of Colwellia sp. PAMC 20917 can be accessed under the accession number NZ_CP014944.1. Colwellia species are often found in cold marine environments, which may suggest that PAMC 20917 is adapted to thrive in such conditions. The presence of flagella likely aids in its mobility within these habitats, allowing the organism to navigate through nutrient-rich waters or sediments. This motility can be critical in accessing resources and potentially evading unfavorable conditions. The traits of Colwellia sp. PAMC 20917 highlight its ecological niche in cold aquatic ecosystems. Understanding the characteristics of this bacterium contributes to the broader knowledge of microbial life in extreme environments, revealing insights into the adaptations that enable survival in low-temperature habitats. The study of such organisms is essential for comprehending biogeochemical cycles in marine ecosystems and the potential applications in biotechnology, particularly in cold-adapted processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyColwelliaceae
GenusColwellia
SpeciesColwellia sp. PAMC 20917
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Colwellia sp. PAMC 20917 chromosome, complete genome.

Gene Summary

Adenine Count

1453386 bp

Thymine Count

1456572 bp

Guanine Count

886647 bp

Cytosine Count

886709 bp

Genome Length

4683314 bp

Protein-coding Genes

3945 genes

Non-Coding Genes

96 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ggdef domain-containing proteinA3Q34_RS19905Not AvailableNegative967 - 150519514.4
is21-like element helper atpase istbA3Q34_RS00010Not AvailableNegative1538 - 230529108.2
is21 family transposaseA3Q34_RS00015Not AvailableNegative2298 - 379157307.6
flavodoxin family proteinA3Q34_RS00025Not AvailablePositive4434 - 489516776.2
c-type cytochromeA3Q34_RS00030Not AvailablePositive5328 - 615230708.7
sensor domain-containing diguanylate cyclaseA3Q34_RS00035Not AvailablePositive6556 - 783348177.7
hypothetical proteinA3Q34_RS00040Not AvailablePositive8223 - 84418341.18
atp-binding proteinA3Q34_RS00045Not AvailableNegative9426 - 1191892752.5
hypothetical proteinA3Q34_RS00050Not AvailablePositive12958 - 1366225973.5
hypothetical proteinA3Q34_RS00055Not AvailablePositive14064 - 1441113179.2

Displaying genes 1 – 10 of 4041 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

178 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000686vanillateC8H7O4Chemical structure of vanillateNot available
Average167.1388Da
Monoisotopic167.0344337Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da

Displaying 1–10 of 178 metabolites

Health Effects

No health effects information available for this bacterium.