Syntrophorhabdus sp. PtaU1.Bin153

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Syntrophorhabdia

Order

Syntrophorhabdales

Family

Syntrophorhabdaceae

Genus

Syntrophorhabdus

Description

Syntrophorhabdus sp. PtaU1.Bin153 is a bacterial strain characterized by possessing a single replicon, indicating a streamlined genetic architecture that may contribute to its efficiency in specific ecological niches. The strain is cataloged under the accession number MVRT00000000.1, which provides a unique identifier for genetic and taxonomic studies. This organism belongs to the genus Syntrophorhabdus, which is known for its role in syntrophic associations, particularly in anaerobic environments. Syntrophorhabdus species typically participate in the degradation of organic compounds, often in cooperation with other microorganisms, such as methanogens. This metabolic interaction is crucial for biogeochemical cycles, particularly in environments like anaerobic digesters or in natural ecosystems where organic matter breakdown is essential. The presence of a single replicon suggests that Syntrophorhabdus sp. PtaU1.Bin153 may be adapted to its ecological niche, potentially maximizing its metabolic efficiency in syntrophic relationships. Such adaptations could enhance its survival and functionality in competitive microbial communities, especially where resources are limited. In summary, Syntrophorhabdus sp. PtaU1.Bin153, with its single replicon and classification under MVRT00000000.1, exemplifies the intricate balance of microbial interactions in anaerobic ecosystems, underpinning the importance of syntrophic bacteria in organic matter decomposition and energy flow within these environments.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassSyntrophorhabdia
OrderSyntrophorhabdales
FamilySyntrophorhabdaceae
GenusSyntrophorhabdus
SpeciesSyntrophorhabdus sp. PtaU1.Bin153
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Syntrophorhabdus sp. PtaU1.Bin153 A4E65_contig000287, whole

Gene Summary

Adenine Count

962871 bp

Thymine Count

953805 bp

Guanine Count

995873 bp

Cytosine Count

996582 bp

Genome Length

3909131 bp

Protein-coding Genes

3774 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxamine 5'-phosphate oxidaseA4E65_00848Not AvailableNegative855370 - 85578015167.4
isoleucine--trna ligaseA4E65_00849Not AvailablePositive856101 - 858857106641.0
lipoprotein signal peptidaseA4E65_00850Not AvailablePositive858830 - 85932118332.6
hypothetical proteinA4E65_00851Not AvailablePositive859364 - 8595979315.32
demethylmenaquinone methyltransferaseA4E65_00852Not AvailablePositive859725 - 86048328625.8
xaa-pro dipeptidaseA4E65_00853Not AvailableNegative860846 - 86204844360.9
proline--trna ligaseA4E65_00854Not AvailableNegative862023 - 86373264323.5
spermidine/putrescine import atp-binding protein potaA4E65_00855Not AvailableNegative863878 - 86500540598.4
sulfate transport system permease protein cyswA4E65_00856Not AvailableNegative865169 - 86586724771.7
pbp superfamily domain proteinA4E65_00857Not AvailableNegative865872 - 86674131450.5

Displaying genes 871 – 880 of 3830 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.