Syntrophorhabdus sp. PtaU1.Bin058

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Syntrophorhabdia

Order

Syntrophorhabdales

Family

Syntrophorhabdaceae

Genus

Syntrophorhabdus

Description

Syntrophorhabdus sp. PtaU1.Bin058 is a microbial species characterized by having a single replicon, which is crucial for its genomic stability and replication. The organism is cataloged under the accession number MVRS00000000.1, providing a reference point for genomic studies and further research into its biological functions. As a member of the Syntrophorhabdus genus, this species likely plays a role in syntrophic relationships, which are essential in anaerobic environments. Syntrophic bacteria are known to cooperate with other microorganisms to degrade organic compounds, a process that is vital in various ecosystems, including anaerobic digesters and sediments. This capability suggests that Syntrophorhabdus sp. PtaU1.Bin058 may be involved in the breakdown of complex organic materials, contributing to nutrient cycling and energy flow within its habitat. The presence of only one replicon emphasizes the potential for streamlined genomic processes, which may enhance its adaptability in specific niches. Understanding the genomic and ecological roles of Syntrophorhabdus sp. PtaU1.Bin058 can provide insights into its contributions to biogeochemical cycles and microbial community dynamics, particularly in environments where organic matter degradation is crucial for ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassSyntrophorhabdia
OrderSyntrophorhabdales
FamilySyntrophorhabdaceae
GenusSyntrophorhabdus
SpeciesSyntrophorhabdus sp. PtaU1.Bin058
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Syntrophorhabdus sp. PtaU1.Bin058 A4E64_contig000263, whole

Gene Summary

Adenine Count

841311 bp

Thymine Count

842835 bp

Guanine Count

880669 bp

Cytosine Count

880303 bp

Genome Length

3445118 bp

Protein-coding Genes

3194 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinA4E64_00019Not AvailableNegative18520 - 1883711054.8
hypothetical proteinA4E64_00020Not AvailableNegative18839 - 1912610525.7
high-affinity branched-chain amino acid transport system permease protein livhA4E64_00021Not AvailablePositive19255 - 1987221734.6
leucine/isoleucine/valine transporter permease subunitA4E64_00022Not AvailablePositive19869 - 2088537334.7
1,3-propanediol dehydrogenaseA4E64_00023Not AvailablePositive20887 - 2207742506.6
nadh oxidaseA4E64_00024Not AvailablePositive22150 - 2410570354.0
putative assembly proteinA4E64_00025Not AvailablePositive25203 - 28109106766.0
rossmann-like domain proteinA4E64_00026Not AvailablePositive28109 - 2897531268.5
nad-dependent protein deacylaseA4E64_00027Not AvailablePositive28968 - 2970227299.8
hypothetical proteinA4E64_00028Not AvailableNegative30467 - 3124629017.7

Displaying genes 31 – 40 of 3243 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.