Syntrophorhabdus sp. PtaB.Bin047

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Syntrophorhabdia

Order

Syntrophorhabdales

Family

Syntrophorhabdaceae

Genus

Syntrophorhabdus

Description

Syntrophorhabdus sp. PtaB.Bin047 is a microbial organism characterized by its single replicon, as indicated by the presence of one genomic structure. The organism is cataloged under the accession number MVQP00000000.1, which provides a reference for its genomic information. Syntrophorhabdus species are known for their role in anaerobic digestion processes, particularly in the degradation of complex organic compounds. They often engage in syntrophic relationships with other microorganisms, which allows them to thrive in environments where they assist in the breakdown of fatty acids and other organic substrates. This capability is crucial for maintaining the balance of microbial communities in anaerobic environments, such as those found in sediments, landfills, and the digestive systems of ruminants. The ecological insight regarding Syntrophorhabdus sp. PtaB.Bin047 lies in its potential contribution to biogeochemical cycling within anaerobic ecosystems. By participating in the degradation of organic materials, this organism helps facilitate nutrient recycling, which is essential for sustaining the health of microbial communities and the overall ecosystem. Understanding the role of Syntrophorhabdus sp. PtaB.Bin047 can provide valuable insights into the dynamics of anaerobic microbial communities and their impact on environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassSyntrophorhabdia
OrderSyntrophorhabdales
FamilySyntrophorhabdaceae
GenusSyntrophorhabdus
SpeciesSyntrophorhabdus sp. PtaB.Bin047
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Syntrophorhabdus sp. PtaB.Bin047 A4E60_contig000269, whole

Gene Summary

Adenine Count

776067 bp

Thymine Count

765140 bp

Guanine Count

1051363 bp

Cytosine Count

1045150 bp

Genome Length

3637720 bp

Protein-coding Genes

3495 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-glycero-alpha-d-manno-heptose 7-phosphate kinaseA4E60_00802Not AvailablePositive809492 - 81048737172.9
d-glycero-alpha-d-manno-heptose 1-phosphate guanylyltransferaseA4E60_00803Not AvailablePositive810504 - 81123826756.5
glycosyltransferase family 10 (fucosyltransferase)A4E60_00804Not AvailablePositive811235 - 814438119272.0
putative oxidoreductase ydgjA4E60_00805Not AvailablePositive814502 - 81552737642.2
dtdp-3-amino-3,6-dideoxy-alpha-d- galactopyranose 3-n-acetyltransferaseA4E60_00806Not AvailablePositive815524 - 81604818589.2
dtdp-3-amino-3,6-dideoxy-alpha-d- galactopyranose transaminaseA4E60_00807Not AvailablePositive816045 - 81714839892.5
bifunctional polymyxin resistance protein arnaA4E60_00808Not AvailablePositive817155 - 81808734793.4
udp-glucose 4-epimeraseA4E60_00809Not AvailablePositive818107 - 81909036886.1
udp-4-amino-4-deoxy-l-arabinose--oxoglutarate aminotransferaseA4E60_00810Not AvailablePositive819087 - 82021742134.5
(dimethylallyl)adenosine trna methylthiotransferase miabA4E60_00811Not AvailablePositive820267 - 82159849502.1

Displaying genes 841 – 850 of 3587 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.