Syntrophorhabdus sp. PtaB.Bin006

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Syntrophorhabdia

Order

Syntrophorhabdales

Family

Syntrophorhabdaceae

Genus

Syntrophorhabdus

Description

Syntrophorhabdus sp. PtaB.Bin006 is characterized by its single replicon, indicating a streamlined genomic structure. This trait may contribute to its ecological niche, potentially enhancing its adaptability and efficiency in specific environments. The organism is cataloged under the accession number MVQN00000000.1, which serves as a reference point for genomic information and further research insights. The classification of Syntrophorhabdus suggests that this bacterium may engage in syntrophic relationships, where it likely cooperates with other microorganisms to degrade complex organic compounds. Such metabolic partnerships are often essential in anaerobic environments, where the breakdown of substrates requires a consortium of species working together. These interactions can play a critical role in nutrient cycling and energy flow within ecosystems. Understanding the genomic and ecological characteristics of Syntrophorhabdus sp. PtaB.Bin006 can provide valuable insights into its role in biogeochemical processes. Its single replicon structure may facilitate rapid adaptation to environmental changes, thus influencing its ability to contribute to organic matter degradation in various habitats. This adaptability underscores the importance of studying such microorganisms to better comprehend their ecological functions and potential applications in biotechnological processes, such as bioremediation or bioenergy production.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassSyntrophorhabdia
OrderSyntrophorhabdales
FamilySyntrophorhabdaceae
GenusSyntrophorhabdus
SpeciesSyntrophorhabdus sp. PtaB.Bin006
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Syntrophorhabdus sp. PtaB.Bin006 A4E58_contig000255, whole

Gene Summary

Adenine Count

859550 bp

Thymine Count

860455 bp

Guanine Count

877647 bp

Cytosine Count

890798 bp

Genome Length

3488450 bp

Protein-coding Genes

3328 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acyl-(acyl-carrier-protein)--udp-n- acetylglucosamine o-acyltransferaseA4E58_00040Not AvailableNegative32678 - 3335825239.5
tdp-4-oxo-6-deoxy-alpha-d-glucose-3, 4-oxoisomeraseA4E58_00041Not AvailableNegative33408 - 3383916258.5
hypothetical proteinA4E58_00042Not AvailablePositive34015 - 3438314100.1
antibiotic efflux pump outer membrane protein arpc precursorA4E58_00043Not AvailableNegative34971 - 3640151480.2
macrolide export atp-binding/permease protein macbA4E58_00044Not AvailableNegative36442 - 3765042621.5
macrolide export atp-binding/permease protein macbA4E58_00045Not AvailableNegative37647 - 3838426884.5
macrolide export protein macaA4E58_00046Not AvailableNegative38381 - 3967045938.1
ecf rna polymerase sigma-e factorA4E58_00047Not AvailablePositive39999 - 4065824966.8
hypothetical proteinA4E58_00048Not AvailablePositive40675 - 4101613110.8
hypothetical proteinA4E58_00049Not AvailablePositive41013 - 4167525367.8

Displaying genes 41 – 50 of 3368 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.