Syntrophorhabdus sp. PtaB.Bin006

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Syntrophorhabdia

Order

Syntrophorhabdales

Family

Syntrophorhabdaceae

Genus

Syntrophorhabdus

Description

Syntrophorhabdus sp. PtaB.Bin006 is characterized by its single replicon, indicating a streamlined genomic structure. This trait may contribute to its ecological niche, potentially enhancing its adaptability and efficiency in specific environments. The organism is cataloged under the accession number MVQN00000000.1, which serves as a reference point for genomic information and further research insights. The classification of Syntrophorhabdus suggests that this bacterium may engage in syntrophic relationships, where it likely cooperates with other microorganisms to degrade complex organic compounds. Such metabolic partnerships are often essential in anaerobic environments, where the breakdown of substrates requires a consortium of species working together. These interactions can play a critical role in nutrient cycling and energy flow within ecosystems. Understanding the genomic and ecological characteristics of Syntrophorhabdus sp. PtaB.Bin006 can provide valuable insights into its role in biogeochemical processes. Its single replicon structure may facilitate rapid adaptation to environmental changes, thus influencing its ability to contribute to organic matter degradation in various habitats. This adaptability underscores the importance of studying such microorganisms to better comprehend their ecological functions and potential applications in biotechnological processes, such as bioremediation or bioenergy production.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassSyntrophorhabdia
OrderSyntrophorhabdales
FamilySyntrophorhabdaceae
GenusSyntrophorhabdus
SpeciesSyntrophorhabdus sp. PtaB.Bin006
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Syntrophorhabdus sp. PtaB.Bin006 A4E58_contig000255, whole

Gene Summary

Adenine Count

859550 bp

Thymine Count

860455 bp

Guanine Count

877647 bp

Cytosine Count

890798 bp

Genome Length

3488450 bp

Protein-coding Genes

3328 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ferrous-iron efflux pump fiefA4E58_02380Not AvailableNegative2435676 - 243666236093.8
serine/threonine-protein kinase bA4E58_02381Not AvailableNegative2436669 - 243736426759.0
hypothetical proteinA4E58_02382Not AvailableNegative2437406 - 243778313857.8
hypothetical proteinA4E58_02383Not AvailableNegative2438090 - 24382666579.14
aminodeoxyfutalosine synthaseA4E58_02384Not AvailablePositive2438482 - 243959141815.4
chorismate dehydrataseA4E58_02385Not AvailablePositive2439588 - 244041531059.2
aminodeoxyfutalosine synthaseA4E58_02386Not AvailablePositive2440422 - 244149239550.8
1,4-dihydroxy-6-naphtoate synthaseA4E58_02387Not AvailablePositive2441492 - 244229829796.7
aminodeoxyfutalosine nucleosidaseA4E58_02388Not AvailablePositive2442280 - 244290923163.3
hypothetical proteinA4E58_02389Not AvailablePositive2443002 - 244352920080.8

Displaying genes 2391 – 2400 of 3368 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.