Candidatus Peregrinibacteria bacterium RIFOXYB12_FULL_41_12

Kingdom

Phylum

Candidatus Peregrinibacteriota

Class

Order

Family

Genus

Description

Candidatus Peregrinibacteria bacterium RIFOXYB12_FULL_41_12 is characterized by having a single replicon, which indicates a streamlined genomic organization typical of some bacteria. The organism is represented in the genomic database with the accession number MFXI00000000.1. The presence of only one replicon can suggest a simpler regulatory mechanism and may facilitate rapid replication and adaptation to environmental changes. This trait is often observed in bacteria that thrive in specialized niches or exhibit symbiotic relationships, where complex genomic structures may not confer a significant advantage. As there is limited information available regarding the specific ecological role or biological functions of Candidatus Peregrinibacteria bacterium RIFOXYB12_FULL_41_12, its adaptation strategies and ecological impact remain largely undetermined. However, the presence of such a bacterium in a given environment could imply specific interactions with other microorganisms or contribute to nutrient cycling within its ecosystem. Overall, the characteristics of Candidatus Peregrinibacteria bacterium RIFOXYB12_FULL_41_12, particularly its single replicon trait, may reflect its adaptability and potential ecological significance, although further research is necessary to elucidate its specific biological functions and interactions within microbial communities.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Peregrinibacteria bacterium RIFOXYB12_FULL_41_12


Gene Summary

Adenine Count

372365 bp

Thymine Count

363197 bp

Guanine Count

259710 bp

Cytosine Count

257326 bp

Genome Length

1255228 bp

Protein-coding Genes

1072 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinA2344_03395Not AvailableNegative821 - 207445125.5
23s ribosomal rnaNot AvailableNot AvailablePositive2611 - 5610Not Available
16s ribosomal rnaNot AvailableNot AvailablePositive2944 - 4415Not Available
hypothetical proteinA2344_03400Not AvailableNegative2173 - 337242241.5
macrolide abc transporter atp-binding proteinA2344_03405Not AvailableNegative3446 - 418026932.2
hypothetical proteinA2344_03410Not AvailableNegative4288 - 457510903.9
6-carboxytetrahydropterin synthase quedA2344_03415Not AvailableNegative4606 - 495613068.7
5s ribosomal rnaNot AvailableNot AvailablePositive5735 - 5850Not Available
hypothetical proteinA2344_03425Not AvailableNegative8925 - 924211778.3
dihydropteroate synthaseA2344_03430Not AvailableNegative9305 - 1047141890.6

Displaying genes 1 – 10 of 1117 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

120 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da

Displaying 1–10 of 120 metabolites

Health Effects

No health effects information available for this bacterium.