Burkholderia sp. PAMC 28687

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia sp. PAMC 28687 is characterized by having a total of eight replicons. This trait indicates a complex genomic structure, which is typical for many members of the Burkholderia genus, known for their diverse metabolic capabilities and adaptability to various environments. The genomic sequences of this strain are represented by multiple accessions: NZ_CP014509.1, NZ_CP014511.1, NZ_CP014506.1, NZ_CP014507.1, NZ_CP014508.1, NZ_CP014512.1, NZ_CP014505.1, and NZ_CP014510.1. These accessions suggest that the strain has been well-documented in genomic databases, providing insights into its genetic composition and potential functionalities. The presence of multiple replicons may allow for a greater flexibility in gene expression and regulation, contributing to its ecological versatility. Burkholderia species are often associated with various environments, including soil and water, and can play significant roles in nutrient cycling and bioremediation. The genomic complexity of Burkholderia sp. PAMC 28687 might enable it to thrive in diverse ecological niches, potentially facilitating interactions with other microorganisms and influencing community dynamics. This adaptability is particularly significant in microbial ecology, where the presence of such versatile organisms can impact ecosystem health and resilience.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia sp. PAMC 28687
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Burkholderia sp. PAMC 28687 plasmid 2, complete sequence.

Gene Summary

Adenine Count

13531 bp

Thymine Count

13191 bp

Guanine Count

17950 bp

Cytosine Count

18043 bp

Genome Length

62715 bp

Protein-coding Genes

58 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

8

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii toxin-antitoxin system higb family toxinAX768_RS31165Not AvailablePositive19969 - 2027411363.7
type ii toxin-antitoxin system higa family antitoxinAX768_RS31170Not AvailablePositive20277 - 2063913606.4
cold-shock proteinAX768_RS31175Not AvailablePositive20778 - 209817272.48
phage integrase family proteinAX768_RS31180Not AvailablePositive21246 - 2263749664.9
site-specific integraseAX768_RS34335Not AvailablePositive22582 - 2319921954.9
hu family dna-binding proteinAX768_RS31185Not AvailablePositive23341 - 236169310.1
is66 family transposaseAX768_RS31190Not AvailableNegative24122 - 2571459278.0
is66 family insertion sequence element accessory protein tnpbAX768_RS31195Not AvailableNegative25793 - 2614013848.8
hypothetical proteinAX768_RS33430Not AvailableNegative26116 - 2651714253.2
alpha/beta fold hydrolaseAX768_RS31210Not AvailablePositive26759 - 2757429211.5

Displaying genes 21 – 30 of 6409 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

23 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da
BASm0003841N-[(R)-4-phosphopantothenoyl]-L-cysteineC12H20N2O9PSChemical structure of N-[(R)-4-phosphopantothenoyl]-L-cysteineNot available
Average399.33Da
Monoisotopic399.064359144Da

Displaying 1–10 of 23 metabolites

Health Effects

No health effects information available for this bacterium.