Burkholderia sp. PAMC 28687

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia sp. PAMC 28687 is characterized by having a total of eight replicons. This trait indicates a complex genomic structure, which is typical for many members of the Burkholderia genus, known for their diverse metabolic capabilities and adaptability to various environments. The genomic sequences of this strain are represented by multiple accessions: NZ_CP014509.1, NZ_CP014511.1, NZ_CP014506.1, NZ_CP014507.1, NZ_CP014508.1, NZ_CP014512.1, NZ_CP014505.1, and NZ_CP014510.1. These accessions suggest that the strain has been well-documented in genomic databases, providing insights into its genetic composition and potential functionalities. The presence of multiple replicons may allow for a greater flexibility in gene expression and regulation, contributing to its ecological versatility. Burkholderia species are often associated with various environments, including soil and water, and can play significant roles in nutrient cycling and bioremediation. The genomic complexity of Burkholderia sp. PAMC 28687 might enable it to thrive in diverse ecological niches, potentially facilitating interactions with other microorganisms and influencing community dynamics. This adaptability is particularly significant in microbial ecology, where the presence of such versatile organisms can impact ecosystem health and resilience.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia sp. PAMC 28687
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Burkholderia sp. PAMC 28687 plasmid 2, complete sequence.

Gene Summary

Adenine Count

13531 bp

Thymine Count

13191 bp

Guanine Count

17950 bp

Cytosine Count

18043 bp

Genome Length

62715 bp

Protein-coding Genes

58 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

8

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyrroloquinoline quinone biosynthesis protein pqqeAX768_RS28820Not AvailablePositive1295763 - 129688742214.3
manganese efflux pump mntpAX768_RS28825Not AvailableNegative1296899 - 129746819708.7
ggdef domain-containing proteinAX768_RS28830Not AvailablePositive1297992 - 129948553615.3
transglycosylase slt domain-containing proteinAX768_RS28835Not AvailablePositive1299611 - 130019820465.4
hypothetical proteinAX768_RS28840Not AvailablePositive1300509 - 130085312462.2
hybrid sensor histidine kinase/response regulatorAX768_RS28845Not AvailableNegative1300863 - 130302878604.1
hypothetical proteinAX768_RS33385Not AvailableNegative1303308 - 13036619915.59
hypothetical proteinAX768_RS28855Not AvailableNegative1303928 - 130427811846.2
response regulatorAX768_RS28860Not AvailableNegative1304422 - 130517128065.7
response regulatorAX768_RS28865Not AvailablePositive1305419 - 130615927705.4

Displaying genes 2841 – 2850 of 6409 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

23 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da
BASm0003841N-[(R)-4-phosphopantothenoyl]-L-cysteineC12H20N2O9PSChemical structure of N-[(R)-4-phosphopantothenoyl]-L-cysteineNot available
Average399.33Da
Monoisotopic399.064359144Da

Displaying 1–10 of 23 metabolites

Health Effects

No health effects information available for this bacterium.