Salipiger sp. CCB-MM3

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Salipiger

Description

Salipiger sp. CCB-MM3 is a Gram-negative, rod-shaped bacterium notable for its genomic complexity, as it possesses seven replicons. This characteristic may indicate a diverse genetic makeup, potentially allowing for varied metabolic capabilities or adaptability to different environments. The specific GenBank accessions associated with Salipiger sp. CCB-MM3 include NZ_CP014597.1, NZ_CP014595.1, NZ_CP014600.1, NZ_CP014596.1, NZ_CP014598.1, NZ_CP014599.1, and NZ_CP014601.1. These accessions represent distinct genomic sequences that contribute to the understanding of its phylogenetic relationships and functional potential. The Gram-negative nature of Salipiger sp. CCB-MM3 suggests that it possesses a characteristic double membrane structure, which can influence its interactions with the environment, including resistance to certain antibiotics and the ability to form biofilms. The rod shape is a common morphology among many bacteria, often associated with motility and adaptability in diverse ecological niches. In summary, Salipiger sp. CCB-MM3 exemplifies a complex genomic structure and morphological traits that may enhance its survival and ecological roles in various habitats. The presence of multiple replicons may facilitate genetic exchange and evolutionary adaptability, highlighting the importance of this bacterium in microbial ecosystems. Understanding these traits can provide insights into its ecological functions and potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusSalipiger
SpeciesSalipiger sp. CCB-MM3
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Salipiger sp. CCB-MM3 plasmid unnamed1, complete sequence.

Gene Summary

Adenine Count

66250 bp

Thymine Count

65500 bp

Guanine Count

91786 bp

Cytosine Count

92270 bp

Genome Length

315806 bp

Protein-coding Genes

306 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lps export abc transporter permease lptgAYJ57_RS13485Not AvailableNegative2816081 - 281717539212.1
lps export abc transporter permease lptfAYJ57_RS13490Not AvailableNegative2817172 - 281829640638.8
leucyl aminopeptidaseAYJ57_RS13495Not AvailablePositive2818459 - 281993151413.2
dna polymerase iii subunit chiAYJ57_RS13500Not AvailablePositive2819999 - 282045716740.9
crp/fnr family transcriptional regulatorAYJ57_RS13505Not AvailablePositive2820968 - 282162724374.6
tigr02281 family clan aa aspartic proteaseAYJ57_RS13510Not AvailableNegative2821631 - 282221521310.9
marc family proteinAYJ57_RS13515Not AvailableNegative2822303 - 282292621994.0
abc-f family atp-binding cassette domain-containing proteinAYJ57_RS13520Not AvailableNegative2822976 - 282485068753.6
nucleoside-diphosphate kinaseAYJ57_RS13525Not AvailablePositive2825175 - 282559715100.8
duf4112 domain-containing proteinAYJ57_RS13530Not AvailableNegative2825700 - 282610114413.7

Displaying genes 3591 – 3600 of 5155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

10 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00011184-(dimethylamino)azobenzeneC14H15N3Chemical structure of 4-(dimethylamino)azobenzeneNot available
Average225.295Da
Monoisotopic225.1265975Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00026033-hydroxy-2-methylpropanoyl-CoAC25H38N7O18P3SChemical structure of 3-hydroxy-2-methylpropanoyl-CoANot available
Average849.59Da
Monoisotopic849.1228839Da
BASm00030222-methyl-cis-aconitateC7H5O6Chemical structure of 2-methyl-cis-aconitateNot available
Average185.113Da
Monoisotopic185.0102586Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da
BASm0003693(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoateC7H7O4Chemical structure of (2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoateNot available
Average155.13Da
Monoisotopic155.034982285Da
BASm0008916(3S)-6-acetamido-3-aminohexanoateC8H16N2O3Chemical structure of (3S)-6-acetamido-3-aminohexanoateNot available
Average188.227Da
Monoisotopic188.116092383Da
BASm00097983-hydroxybutane-1,2,3-tricarboxylateC7H7O7Chemical structure of 3-hydroxybutane-1,2,3-tricarboxylateNot available
Average203.128Da
Monoisotopic203.0208233Da

Displaying 1–10 of 10 metabolites

Health Effects

No health effects information available for this bacterium.