Dickeya fangzhongdai str. DSM 101947

Rodfacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya fangzhongdai strain DSM 101947 is a rod-shaped bacterium notable for its motility, which is facilitated by the presence of flagella. This trait allows the organism to navigate its environment, potentially influencing its ecological interactions and pathogenicity. This strain possesses two replicons, indicating a complex genetic architecture that may contribute to its adaptability and evolutionary potential. The presence of multiple replicons can enhance the bacterium's ability to regulate gene expression and respond to environmental changes. The strain is cataloged with the accession numbers NZ_CP025004.1 and NZ_CP025003.1, which provide a basis for its genomic analysis and characterization. These genomic sequences are essential for understanding the genetic basis of its traits and functions, and they serve as references for further research into the biology of this species. In summary, Dickeya fangzhongdai strain DSM 101947 is characterized by its rod shape, motility due to flagella, and a dual-replicon structure. These features suggest a versatile organism that may play a significant role in its ecological niche, potentially influencing plant health and soil dynamics. Understanding its genetic makeup and ecological interactions could provide insights into its behavior and impact in various environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya fangzhongdai
StrainDSM 101947

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Allium cepa, Pyrus pyrifolia, Colocasia esculenta
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya fangzhongdai strain DSM 101947 plasmid pJS5, complete

Gene Summary

Adenine Count

1282 bp

Thymine Count

1519 bp

Guanine Count

1169 bp

Cytosine Count

1314 bp

Genome Length

5284 bp

Protein-coding Genes

7 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Putative dna-binding response regulatorCVE23_RS21405Not AvailablePositive4765878 - 476657626382.9
chromosomal replication initiator protein dnaaCVE23_RS00005Not AvailablePositive82 - 147052089.4
dna polymerase iii subunit betaCVE23_RS00010Not AvailablePositive1475 - 257540543.9
dna replication/repair protein recfCVE23_RS00015Not AvailablePositive2726 - 381140564.5
dna topoisomerase (atp-hydrolyzing) subunit bCVE23_RS00020Not AvailablePositive3829 - 624089965.9
caspase domain-containing proteinCVE23_RS00025Not AvailableNegative6528 - 750235245.8
tir domain-containing proteinCVE23_RS00030Not AvailableNegative7552 - 786612068.4
toll/interleukin-1 receptor domain-containing proteinCVE23_RS00035Not AvailableNegative7961 - 846419584.2
tir domain-containing proteinCVE23_RS00040Not AvailableNegative8467 - 888615530.6
mfs transporterCVE23_RS00045Not AvailableNegative9231 - 1041541194.3

Displaying genes 121 – 130 of 4453 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

10 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0010449N(6)-(D-ribulosyl)-L-lysineC11H23N2O6Chemical structure of N(6)-(D-ribulosyl)-L-lysineNot available
Average279.312Da
Monoisotopic279.1550629Da
BASm0010451N(6)-(3-O-phospho-D-ribulosyl)-L-lysineC11H22N2O9PChemical structure of N(6)-(3-O-phospho-D-ribulosyl)-L-lysineNot available
Average357.276Da
Monoisotopic357.1068409Da
BASm0010454N(6)-(D-erythrulosyl)-L-lysineC10H21N2O5Chemical structure of N(6)-(D-erythrulosyl)-L-lysineNot available
Average249.286Da
Monoisotopic249.1444982Da
BASm0010455N(6)-(3-O-phospho-D-erythrulosyl)-L-lysineC10H20N2O8PChemical structure of N(6)-(3-O-phospho-D-erythrulosyl)-L-lysineNot available
Average327.25Da
Monoisotopic327.09627619Da

Displaying 1–10 of 10 metabolites

Health Effects

Health ConditionRelationReference
Soft rotCausesPMC9649655
Bleeding cankerCausesPMC9649655
Soft rot diseaseCausesPMC9649655
Bleeding canker diseaseCausesPMC9649655

Displaying health effects 1 – 4 of 4 in total