Dickeya fangzhongdai str. DSM 101947

Rodfacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya fangzhongdai strain DSM 101947 is a rod-shaped bacterium notable for its motility, which is facilitated by the presence of flagella. This trait allows the organism to navigate its environment, potentially influencing its ecological interactions and pathogenicity. This strain possesses two replicons, indicating a complex genetic architecture that may contribute to its adaptability and evolutionary potential. The presence of multiple replicons can enhance the bacterium's ability to regulate gene expression and respond to environmental changes. The strain is cataloged with the accession numbers NZ_CP025004.1 and NZ_CP025003.1, which provide a basis for its genomic analysis and characterization. These genomic sequences are essential for understanding the genetic basis of its traits and functions, and they serve as references for further research into the biology of this species. In summary, Dickeya fangzhongdai strain DSM 101947 is characterized by its rod shape, motility due to flagella, and a dual-replicon structure. These features suggest a versatile organism that may play a significant role in its ecological niche, potentially influencing plant health and soil dynamics. Understanding its genetic makeup and ecological interactions could provide insights into its behavior and impact in various environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya fangzhongdai
StrainDSM 101947

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Allium cepa, Pyrus pyrifolia, Colocasia esculenta
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya fangzhongdai strain DSM 101947 chromosome, complete

Gene Summary

Adenine Count

1086499 bp

Thymine Count

1087221 bp

Guanine Count

1423061 bp

Cytosine Count

1430382 bp

Genome Length

5027163 bp

Protein-coding Genes

4248 genes

Non-Coding Genes

198 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mbed family mobilization/exclusion proteinCVE23_RS22830Not AvailableNegative325 - 5619069.56
mbeb family mobilization proteinCVE23_RS22835Not AvailableNegative622 - 110717610.0
relaxase/mobilization nuclease domain-containing proteinCVE23_RS23145Not AvailableNegative1154 - 157616247.3
plasmid mobilization proteinCVE23_RS22550Not AvailableNegative1785 - 211112608.2
kiwa anti-phage protein kwab-like domain-containing proteinCVE23_RS22555Not AvailableNegative2352 - 349743062.9
anti-phage protein kwaaCVE23_RS22560Not AvailableNegative3490 - 414624949.7
replication initiation proteinCVE23_RS22565Not AvailableNegative4136 - 503234059.4
CiCVE23_RS12650Not AvailableNegative2839887 - 284072929941.8
hypothetical proteinCVE23_RS12655Not AvailablePositive2840854 - 284131816559.5
Replication gene b proteinCVE23_RS12660Not AvailablePositive2841321 - 284185120852.9

Displaying genes 1 – 10 of 4453 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

5 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001650N-acetyl-9-O-acetylneuraminateC13H20NO10Chemical structure of N-acetyl-9-O-acetylneuraminateNot available
Average350.301Da
Monoisotopic350.109269428Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm0002396scyllo-inosineC6H10O6Chemical structure of scyllo-inosineNot available
Average178.14Da
Monoisotopic178.047738042Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da

Displaying 1–5 of 5 metabolites

Health Effects

Health ConditionRelationReference
Soft rotCausesPMC9649655
Bleeding cankerCausesPMC9649655
Soft rot diseaseCausesPMC9649655
Bleeding canker diseaseCausesPMC9649655

Displaying health effects 1 – 4 of 4 in total