Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_10151 | Not Available | Positive | 66019 - 66582 | 22457.1 |
| fecr family protein | SAMN04487898_10152 | Not Available | Positive | 66646 - 67785 | 42576.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_10153 | Not Available | Positive | 67907 - 71434 | 131249.0 |
| susd family protein | SAMN04487898_10154 | Not Available | Positive | 71456 - 72838 | 51852.9 |
| peroxiredoxin | SAMN04487898_10155 | Not Available | Positive | 72950 - 74062 | 41426.3 |
| thioredoxin | SAMN04487898_10156 | Not Available | Positive | 74069 - 75325 | 47816.7 |
| diadenosine tetraphosphate (ap4a) hydrolase | SAMN04487898_10157 | Not Available | Negative | 75390 - 75815 | 15978.1 |
| dna-binding transcriptional regulator yhcf, gntr family | SAMN04487898_10158 | Not Available | Negative | 75888 - 76919 | 38693.2 |
| f5/8 type c domain-containing protein | SAMN04487898_10159 | Not Available | Positive | 77140 - 77628 | 18452.1 |
| alpha-l-fucosidase | SAMN04487898_10160 | Not Available | Positive | 77655 - 79064 | 54845.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

