Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cu-processing system atp-binding protein | SAMN04487898_10141 | Not Available | Positive | 55007 - 55711 | 26152.4 |
| cu-processing system permease protein | SAMN04487898_10142 | Not Available | Positive | 55715 - 56482 | 28632.4 |
| iron complex outermembrane recepter protein | SAMN04487898_10143 | Not Available | Positive | 57103 - 59286 | 81089.0 |
| helix-turn-helix domain-containing protein | SAMN04487898_10144 | Not Available | Positive | 59436 - 60218 | 29713.0 |
| dihydrofolate reductase | SAMN04487898_10145 | Not Available | Positive | 60283 - 60825 | 20205.3 |
| aerobic c4-dicarboxylate transport protein | SAMN04487898_10146 | Not Available | Negative | 60856 - 62070 | 44444.1 |
| aerobic c4-dicarboxylate transport protein | SAMN04487898_10147 | Not Available | Negative | 62137 - 63426 | 46599.6 |
| histidine kinase | SAMN04487898_10148 | Not Available | Positive | 63578 - 64672 | 42668.7 |
| two component transcriptional regulator, lyttr family | SAMN04487898_10149 | Not Available | Positive | 64669 - 65343 | 26045.8 |
| ribosomal protein s18 acetylase rimi | SAMN04487898_10150 | Not Available | Positive | 65366 - 65842 | 18131.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

