Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transglutaminase-like superfamily protein | SAMN04487898_102287 | Not Available | Positive | 927820 - 928287 | 17859.9 |
| asparagine synthase (glutamine-hydrolysing) | SAMN04487898_102288 | Not Available | Positive | 928284 - 930104 | 69795.8 |
| hypothetical protein | SAMN04487898_102289 | Not Available | Positive | 930134 - 930286 | 5373.06 |
| hypothetical protein | SAMN04487898_102290 | Not Available | Positive | 930329 - 931237 | 34075.9 |
| hypothetical protein | SAMN04487898_102291 | Not Available | Positive | 931239 - 933311 | 78970.4 |
| uncharacterised nucleotidyltransferase | SAMN04487898_102292 | Not Available | Negative | 933298 - 934485 | 45582.8 |
| dna-binding transcriptional regulator, xre-family hth domain | SAMN04487898_102293 | Not Available | Positive | 934854 - 935192 | 12837.7 |
| formyltetrahydrofolate deformylase | SAMN04487898_102294 | Not Available | Negative | 935217 - 936041 | 30948.1 |
| gdpmannose 4,6-dehydratase | SAMN04487898_102295 | Not Available | Negative | 936109 - 937245 | 43005.6 |
| udp-n-acetyl-d-galactosamine dehydrogenase | SAMN04487898_102296 | Not Available | Negative | 937299 - 938573 | 46764.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

